SNP Profiles of CCN 51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTCCCTACGGGTATACCTAGGTAATTCC
1._RUQ_1736
CTCCCTACGGGTATACCTAGGTAATTCC
2._RUQ_1737C
CTCCCTACGGGTATACCTAGGTAATTCC
3._RUQ_1737B
CTCCCTACGGGTATACCTAGGTAATTCC
4._CCN_51
______________AC______AA____
5._CCN_51
______________AC______AA____
6._CCN_51
______________AC______AA____
7._CCN_51
______________AC______AA____
8._CCN_51
______________AC______AA____
9._CCN_51
______________AC______AA____
10._CCN_51
______________AC______AA____
11._CCN_51
______________AC______AA____
12._CCN_51
______________AC______AA____
13._CCN_51
______________AC______AA____
14._GC-07-019-1-21
______________AC______AA____
15._GC-07-019-1-21
______________AC______AA____
16._GC-07-019-1-21
______________AC______AA____
17._GC-07-019-1-21
______________AC______AA____
18._GC-06-4-1-04
______________AC______AA____
19._GC-07-019-1-21
______________AC______AA____
20._GC-07-019-1-21
______________AC______AA____
21._GC-07-019-1-21
______________AC______AA____
22._GC-07-19-1-21
______________AC______AA____
23._RUQ_1736
______________AC______AA____
24._MITC-000000
______________AC______AA____
25._CCN_51
______________AA______GG____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCCTAACCAAAACCAACCCCTTAACG
1._RUQ_1736
AGCCCTAACCAAAACCAACCCCTTAACG
2._RUQ_1737C
AGCCCTAACCAAAACCAACCCCTTAACG
3._RUQ_1737B
AGCCCTAACC__AACCAACCCCTTAACG
4._CCN_51
__________AC__CC__CC________
5._CCN_51
__________AC__CC__CC________
6._CCN_51
__________AC__CC__CC________
7._CCN_51
__________AC__CC__CC________
8._CCN_51
__________AC__CC__CC________
9._CCN_51
__________AC__CC__CC________
10._CCN_51
__________AC__CC__CC________
11._CCN_51
__________AC__CC__CC________
12._CCN_51
__________AC__CC__CC________
13._CCN_51
__________AC__CC____________
14._GC-07-019-1-21
AG________AC__CC____CC______
15._GC-07-019-1-21
AG________AC__CC__CCCC______
16._GC-07-019-1-21
AG________AC__CC__CCCC______
17._GC-07-019-1-21
AG________AC__CC__CCCC______
18._GC-06-4-1-04
AG________AC__CC__CCCC______
19._GC-07-019-1-21
AG________AC__CC__CCCC______
20._GC-07-019-1-21
AG________AC__CC__CCCC______
21._GC-07-019-1-21
AG________AC__CC__CCCC______
22._GC-07-19-1-21
AG________AC__CC__CCGG______
23._RUQ_1736
AG________AC__CC__CCGG______
24._MITC-000000
AG________AC__CC__CCGG______
25._CCN_51
__________CC__CC__CC________
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGCCTTGGGGCTCTCCAATTCCAGGGAA
1._RUQ_1736
AGCCTTGGGGCTCTCCAATTCCAGGGAA
2._RUQ_1737C
AGCCTTGGGGCTCTCCAATTCCAGGGAA
3._RUQ_1737B
AGCCTTGGGGCTCTCCAATTCCAGGGAA
4._CCN_51
AG____GG____________CC____AA
5._CCN_51
AG____GG____________CC____AA
6._CCN_51
AG____GG____________CC____AA
7._CCN_51
AG____GG____________CC____AA
8._CCN_51
AG____GG____________CC____AA
9._CCN_51
AG____GG____________CC____AA
10._CCN_51
AG____GG____________CC____AA
11._CCN_51
AG____GG____________CC____AA
12._CCN_51
AG____GG____________CC____AA
13._CCN_51
AG____GG__________________AA
14._GC-07-019-1-21
AG____GGGG____CC__CG__AG__AA
15._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
16._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
17._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
18._GC-06-4-1-04
AG__CCGGGG____CC__CGCCAG__AA
19._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
20._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
21._GC-07-019-1-21
AG__CCGGGG____CC__CGCCAG__AA
22._GC-07-19-1-21
______CCGG____CC__CGGGAG__AA
23._RUQ_1736
______CCGG____CC__CGGGAG__AA
24._MITC-000000
______CCGG____CC__CGGGAG__AA
25._CCN_51
GG____TT____________CC____AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCCCATCTAGCTCTGTAACTTTGTATAG
1._RUQ_1736
CCCCATCTAGCTCTGTAACTTTGTATAG
2._RUQ_1737C
CCCCATCTAGCTCTGTAACTTTGTATAG
3._RUQ_1737B
CCCCAT__AGCTCTGTAA__TTGT__AG
4._CCN_51
________AG__CT______TT______
5._CCN_51
________AG__CT______TT______
6._CCN_51
________AG__CT______TT______
7._CCN_51
________AG__CT______TT______
8._CCN_51
________AG__CT______TT______
9._CCN_51
________AG__CT______TT______
10._CCN_51
________AG__CT______TT______
11._CCN_51
________AG__CT______TT______
12._CCN_51
________AG__CT______TT______
13._CCN_51
____________CT______TT______
14._GC-07-019-1-21
CC__________CT______TT______
15._GC-07-019-1-21
CC______AG__CT______TT______
16._GC-07-019-1-21
CC______AG__CT______TT______
17._GC-07-019-1-21
CC______AG__CT______TT______
18._GC-06-4-1-04
CC______AG__CT______TT______
19._GC-07-019-1-21
CC______AG__CT______TT______
20._GC-07-019-1-21
CC______AG__CT______TT______
21._GC-07-019-1-21
CC______AG__CT______TT______
22._GC-07-19-1-21
________AG__________AA______
23._RUQ_1736
________AG__________AA______
24._MITC-000000
________AG__________AA______
25._CCN_51
________AA__CC______GG______
 57 58 59 60           
_Input profile
GGGGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1736
GGGGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1737C
GGGGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1737B
GGGGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._CCN_51
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-06-4-1-04
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-07-019-1-21
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-07-19-1-21
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._RUQ_1736
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._MITC-000000
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._CCN_51
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CCN_51 RUQ_1737

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._CCN_51 RUQ_1736

identical
60 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._CCN_51 RUQ_1737C

identical
60 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._CCN_51 RUQ_1737B

identical
56 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

5._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

6._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

7._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

8._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

9._CCN_51

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

10._CCN_51

96.2 %
13 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

11._CCN_51

96.2 %
13 shared markers

 Dapeng Zhang, 2016

12._CCN_51

96.2 %
13 shared markers

 Dapeng Zhang, 2016

13._CCN_51

95 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

14._CCN_51 GC-07-019-1-21

91.2 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

15._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

16._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

17._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
 Mars, 2018

18._CCN_51 GC-06-4-1-04

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

19._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
 Mars, 2018

20._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
 Mars, 2018

21._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
 Mars, 2018

22._CCN_51 GC-07-19-1-21

61.8 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
 Mars, 2018

23._CCN_51 RUQ_1736

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Mars, 2018

24._CCN_51 MITC-000000

61.8 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._CCN_51

46.2 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527