SNP Profiles of EET 399   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTGGGGGGTTGTGTACGTCTTTAACC
1._EET_399_[ECU]___
____CG________GT____CT__AA__
2._EET_399_[ECU]___
ATTTCCGGAGTTGGGGAATTCCTTGGCC
3._EET_399_[ECU]___
____CC________GG____________
4._EET_399_[ECU]___
____CC________GG____CC__GG__
5._EET_399_[ECU]___
____CC________GG____CC__GG__
6._EET_399_[ECU]___
____CC________GG____CC__GG__
7._EET_399_[ECU]___
____CC________GG____CC__GG__
8._EET_399_[ECU]___
____CC________GG____CC__GG__
9._EET_399_[ECU]___
____CC________GG____CC__GG__
10._EET_399_[ECU]___
____CC________GG____CC__GG__
11._EET_399_[ECU]___
____CC________GG____CC__GG__
12._EET_399_[ECU]___
____CC________GG____CC__GG__
13._EET_399_[ECU]___
____CC________GG____CC__GG__
14._EET_399_[ECU]___
____CC________GG____CC__GG__
15._EET_399_[ECU]___
____CC________GG____CC__GG__
16._EET_399_[ECU]___
____CC________GG____CC__GG__
17._EET_399_[ECU]___
____GG__________________GG__
18._EET_399_[ECU]___
____CC________GG____CC__GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTCTGGCGAAGGTTAAAACTTTAGGG
1._EET_399_[ECU]___
______AG____CG____________GT
2._EET_399_[ECU]___
AATTCCAACGGGCGCTTTACTTCTAGGT
3._EET_399_[ECU]___
____CCAA____CG____AC____AGGT
4._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
5._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
6._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
7._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
8._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
9._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
10._EET_399_[ECU]___
____CCAA__GGCGCG__AC____AGGT
11._EET_399_[ECU]___
______AA____CG____________GT
12._EET_399_[ECU]___
______AA____CG____________GT
13._EET_399_[ECU]___
______AA____CG____________GT
14._EET_399_[ECU]___
______AA____CG____________GT
15._EET_399_[ECU]___
______AA____CG____________GT
16._EET_399_[ECU]___
______AA____CG____________GT
17._EET_399_[ECU]___
______AA__GGCGCG__AC____AGAC
18._EET_399_[ECU]___
______AA____CG____________GT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CTCCAGCCAGTTCTCCAACCAACCTTAC
1._EET_399_[ECU]___
____GG________AC__CC__CC____
2._EET_399_[ECU]___
CTCGAACCAGTTCCACAAGGAAACCTAA
3._EET_399_[ECU]___
CT__________CCAC__GG__AC____
4._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
5._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
6._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
7._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
8._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
9._EET_399_[ECU]___
CT__AA______CCAC__GG__AC____
10._EET_399_[ECU]___
CT__AA______CCAC__GG________
11._EET_399_[ECU]___
____AA________AC__GG__AC____
12._EET_399_[ECU]___
____AA________AC__GG__AC____
13._EET_399_[ECU]___
____AA________AC__GG__AC____
14._EET_399_[ECU]___
____AA________AC__GG__AC____
15._EET_399_[ECU]___
____AA________AC__GG__AC____
16._EET_399_[ECU]___
____AA________AC__GG__AC____
17._EET_399_[ECU]___
____________GGAC__GG__AC____
18._EET_399_[ECU]___
____AA________AC__GG________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTCCAAAATTAATTAGCTACTTGGGGAC
1._EET_399_[ECU]___
__________AG______AC________
2._EET_399_[ECU]___
CCCCAGAATTGGGGAGCTACAATTGGCC
3._EET_399_[ECU]___
____AG____GG______AC________
4._EET_399_[ECU]___
____AG____GG______AC________
5._EET_399_[ECU]___
____AG____GG______AC________
6._EET_399_[ECU]___
____AG____GG______AC________
7._EET_399_[ECU]___
____AG____GG______AC________
8._EET_399_[ECU]___
____AG____GG______AC________
9._EET_399_[ECU]___
____AG____GG______AC________
10._EET_399_[ECU]___
____AG____GG______AC________
11._EET_399_[ECU]___
__________GG______AC________
12._EET_399_[ECU]___
__________GG______AC________
13._EET_399_[ECU]___
__________GG______AC________
14._EET_399_[ECU]___
__________GG______AC________
15._EET_399_[ECU]___
__________GG______AC________
16._EET_399_[ECU]___
__________GG______AC________
17._EET_399_[ECU]___
____AG____GG______AC________
18._EET_399_[ECU]___
__________GG______AC________
 57 58 59            
_Input profile
CCACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._EET_399_[ECU]___
TTAACTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._EET_399_[ECU]___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_399_[ECU] RUQ_745

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._EET_399_[ECU]

73.1 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

2._EET_399_[ECU] RUQ_745B

59.3 %
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._EET_399_[ECU] RUQ_745

46.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

8._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

9._EET_399_[ECU] GC-04-047-3-11

40.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

10._EET_399_[ECU] GC-04-047-3-11

40 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_399_[ECU]

34.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

12._EET_399_[ECU]

34.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

13._EET_399_[ECU]

34.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

14._EET_399_[ECU]

34.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

15._EET_399_[ECU]

34.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

16._EET_399_[ECU] RUQ_745

34.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._EET_399_[ECU] RUQ_745

34.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._EET_399_[ECU]

33.3 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13