SNP Profiles of EET 399 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	TT	CC	GG	AG	TT	GG	GG	AA	TT	CC	TT	GG	CC
1._RUQ_745	__	__	CC	__	__	__	__	GG	__	__	__	__	__	__
2._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
3._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
4._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
5._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
6._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
7._RUQ_745	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
8._EET_399_[ECU]	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
9._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
10._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
11._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
12._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
13._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
14._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
15._GC-04-047-3-11	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
16._RUQ_745	__	__	GG	__	__	__	__	__	__	__	__	__	GG	__
17._RUQ_745	AA	TT	GG	GG	GG	TT	GT	GT	AC	GT	CT	TT	AA	CC
18._EET_399_[ECU]	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	TT	CC	AA	CG	GG	CG	CT	TT	AC	TT	CT	AG	GT
1._RUQ_745	__	__	CC	AA	__	__	CG	__	__	AC	__	__	AG	GT
2._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
3._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
4._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
5._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
6._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
7._RUQ_745	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
8._EET_399_[ECU]	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
9._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
10._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
11._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
12._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
13._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
14._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
15._GC-04-047-3-11	__	__	CC	AA	__	GG	CG	CG	__	AC	__	__	AG	GT
16._RUQ_745	__	__	__	AA	__	GG	CG	CG	__	AC	__	__	AG	AC
17._RUQ_745	AA	TT	CT	GG	CG	AA	GG	TT	AA	AA	CT	TT	AG	GG
18._EET_399_[ECU]	__	__	__	AG	__	__	CG	__	__	__	__	__	__	GT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CG	AA	CC	AG	TT	CC	AC	AA	GG	AA	AC	CT	AA
1._RUQ_745	CT	__	__	__	__	__	CC	AC	__	GG	__	AC	__	__
2._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
3._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
4._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
5._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
6._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
7._RUQ_745	__	__	AA	__	__	__	__	AC	__	GG	__	AC	__	__
8._EET_399_[ECU]	__	__	AA	__	__	__	__	AC	__	GG	__	__	__	__
9._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
10._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
11._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
12._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
13._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
14._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	AC	__	__
15._GC-04-047-3-11	CT	__	AA	__	__	__	CC	AC	__	GG	__	__	__	__
16._RUQ_745	__	__	__	__	__	__	GG	AC	__	GG	__	AC	__	__
17._RUQ_745	CT	CC	AG	CC	AG	TT	CT	CC	AA	CC	AA	CC	TT	AC
18._EET_399_[ECU]	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AG	AA	TT	GG	GG	AG	CT	AC	AA	TT	GG	CC
1._RUQ_745	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
2._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
3._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
4._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
5._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
6._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
7._RUQ_745	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
8._EET_399_[ECU]	__	__	__	__	__	GG	__	__	__	AC	__	__	__	__
9._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
10._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
11._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
12._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
13._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
14._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
15._GC-04-047-3-11	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
16._RUQ_745	__	__	AG	__	__	GG	__	__	__	AC	__	__	__	__
17._RUQ_745	CT	CC	AA	AA	TT	AA	TT	AG	CT	AC	TT	GG	GG	AC
18._EET_399_[ECU]	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__

	57	58	59
_Input profile	TT	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_745	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_745	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-04-047-3-11	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_745	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_745	CC	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._EET_399_[ECU]	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EET_399_[ECU] RUQ_745B

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.553 Nan
0.411

1._EET_399_[ECU] RUQ_745

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._EET_399_[ECU]

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

3._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

4._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

5._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

6._EET_399_[ECU]

identical
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

7._EET_399_[ECU] RUQ_745

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._EET_399_[ECU]

identical
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

9._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

10._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

13._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

14._EET_399_[ECU] GC-04-047-3-11

95.2 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

15._EET_399_[ECU] GC-04-047-3-11

95 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._EET_399_[ECU] RUQ_745

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._EET_399_[ECU] RUQ_745

59.3 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.575 Cri
0.421

18._EET_399_[ECU]

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13