SNP Profiles of GU 125 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCCGGAGTTGGTTAAGGCCTTGGCC
1._GU_114_/P___
____CC________TT____________
2._GU_114_/P___
____CC________TT____CC__GG__
3._GU_114_/P___
____CC________TT____CC__GG__
4._GU_114_/P___
____CC________TT____CC__GG__
5._GU_114_/P___
____CC________TT____CC__GG__
6._GU_114_/P___
____CC________TT____CC__GG__
7._GU_114_/P___
____CC________TT____CC__GG__
8._GU_114_/P___
____CC________TT____CC__GG__
9._GU_114_/P___
______________TT____CC__GG__
10._GU_114_/P___
____CC________TT____CC______
11._GU_114_/P___
____GG______________________
12._GU_114_/P___
____GG________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCAGCCGGGGCCAAAATTTTAAGG
1._GU_114_/P___
____CCAG____GG____AA____AAGG
2._GU_114_/P___
______AG____GG____________GG
3._GU_114_/P___
______AG____GG____________GG
4._GU_114_/P___
______AG____GG____________GG
5._GU_114_/P___
______AG____GG____________GG
6._GU_114_/P___
______AG____GG____________GG
7._GU_114_/P___
______AG____GG____________GG
8._GU_114_/P___
____________GG____________GG
9._GU_114_/P___
______AG____GG____________GG
10._GU_114_/P___
______AG____GG____________GG
11._GU_114_/P___
____________CC______________
12._GU_114_/P___
______AG__GGCCCC__AA____AACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCAGCTCCCCATCCAGAACTCC
1._GU_114_/P___
CC__________CCCC__CC__AA____
2._GU_114_/P___
____AA________CC__CC__AA____
3._GU_114_/P___
____AA________CC__CC__AA____
4._GU_114_/P___
____AG________CC__CC__AA____
5._GU_114_/P___
____AG________CC__CC__AA____
6._GU_114_/P___
____AG________CC__CC__AA____
7._GU_114_/P___
____AG________CC__CC__AA____
8._GU_114_/P___
____AG________CC__CC__AA____
9._GU_114_/P___
____AG________CC__CC__AA____
10._GU_114_/P___
____AG________CC__CC__AA____
11._GU_114_/P___
____________CCCC__CC________
12._GU_114_/P___
____________GGCC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAACCGGGGGGCCAAAATTGGCC
1._GU_114_/P___
____GG____GG______AA________
2._GU_114_/P___
__________GG______AA________
3._GU_114_/P___
__________GG______AA________
4._GU_114_/P___
__________GG______AA________
5._GU_114_/P___
__________GG______AA________
6._GU_114_/P___
__________GG______AA________
7._GU_114_/P___
__________GG______AA________
8._GU_114_/P___
__________GG______AA________
9._GU_114_/P___
__________GG______AA________
10._GU_114_/P___
__________GG______AA________
11._GU_114_/P___
__________GG______AA________
12._GU_114_/P___
____GG____GG______AA________
 57 58 59            
_Input profile
TTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_114_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_114_/P RUQ_813

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_114_/P RUQ_813

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_114_/P RUQ_813

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_114_/P

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X3 Y18
 Dapeng Zhang, 2016

4._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 1
 Dapeng Zhang, 2016

5._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 2
 Dapeng Zhang, 2016

6._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 3
 Dapeng Zhang, 2016

7._GU_114_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 7
 Dapeng Zhang, 2016

8._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 5
 Dapeng Zhang, 2016

9._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 12
 Dapeng Zhang, 2016

10._GU_114_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8413 9
 Dapeng Zhang, 2016

11._GU_114_/P RUQ_813

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._GU_114_/P RUQ_813

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13