SNP Profiles of GU 125 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCCGGAGTTGGTTAAGGCCTTGGCC
1._GU_261_/P___
____CC________TT____________
2._GU_261_/P___
____CC________TT____CC__GG__
3._GU_261_/P___
____CC________TT____CC__GG__
4._GU_261_/P___
____CC________TT____CC__GG__
5._GU_261_/P___
____CC________TT____CC__GG__
6._GU_261_/P___
____CC________TT____CC__GG__
7._GU_261_/P___
____CC________TT____CC__GG__
8._GU_261_/P___
____CC________TT____CC__GG__
9._GU_261_/P___
____CC________TT____CC__GG__
10._GU_261_/P___
____CC________TT____CC__GG__
11._GU_261_/P___
____CC________TT____CC__GG__
12._GU_261_/P___
____CC________TT____CC__GG__
13._GU_261_/P___
____CC________TT____CC__GG__
14._GU_261_/P___
____CC________TT____CC__GG__
15._GU_261_/P___
____CC________TT____CC__GG__
16._GU_261_/P___
____CC________TT____CC__GG__
17._GU_261_/P___
____CC________TT____CC__GG__
18._GU_261_/P___
____CC________TT____CC__GG__
19._GU_261_/P___
____CC________TT____CC__GG__
20._GU_261_/P___
____CC________TT____CC__GG__
21._GU_261_/P___
____CC________TT____CC__GG__
22._GU_261_/P___
____CC________TT____CC__GG__
23._GU_261_/P___
____CC________TT____CC__GG__
24._GU_261_/P___
____CC________TT____CC__GG__
25._GU_261_/P___
____CC________TT____CC__GG__
26._GU_261_/P___
____CC________TT____CC__GG__
27._GU_261_/P___
____CC________TT____CC__GG__
28._GU_261_/P___
____CC________TT____CC__GG__
29._GU_261_/P___
____CC________TT____CC__GG__
30._GU_261_/P___
____CC________TT____CC__GG__
31._GU_261_/P___
____CC________TT____CC__GG__
32._GU_261_/P___
____CC________TT____CC__GG__
33._GU_261_/P___
____CC________TT____CC__GG__
34._GU_261_/P___
____CC________TT____CC__GG__
35._GU_261_/P___
____CC________GT____CC__GG__
36._GU_261_/P___
____CC________TT____CC__GG__
37._GU_261_/P___
____GG______________________
38._GU_261_/P___
____GG________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCGGCCGGGGCTAAAATTTTAAGG
1._GU_261_/P___
____CCGG____GG____AA____AAGG
2._GU_261_/P___
______GG____GG____________GG
3._GU_261_/P___
______GG____GG____________GG
4._GU_261_/P___
______GG____GG____________GG
5._GU_261_/P___
______GG____GG____________GG
6._GU_261_/P___
______GG____GG____________GG
7._GU_261_/P___
______GG____GG____________GG
8._GU_261_/P___
______GG____GG____________GG
9._GU_261_/P___
______GG____GG____________GG
10._GU_261_/P___
______GG____GG____________GG
11._GU_261_/P___
______GG____GG____________GG
12._GU_261_/P___
______GG____GG____________GG
13._GU_261_/P___
______GG____GG____________GG
14._GU_261_/P___
______GG____GG____________GG
15._GU_261_/P___
______GG____GG____________GG
16._GU_261_/P___
______GG____GG____________GG
17._GU_261_/P___
______GG____GG____________GG
18._GU_261_/P___
______GG____GG____________GG
19._GU_261_/P___
______GG____GG____________GG
20._GU_261_/P___
______GG____GG____________GG
21._GU_261_/P___
______GG____GG____________GG
22._GU_261_/P___
______GG____GG____________GG
23._GU_261_/P___
______GG____GG____________GG
24._GU_261_/P___
______GG____GG____________GG
25._GU_261_/P___
______GG____GG____________GG
26._GU_261_/P___
______GG____GG____________GG
27._GU_261_/P___
______GG____GG____________GG
28._GU_261_/P___
______GG____GG____________GG
29._GU_261_/P___
______GG____GG____________GG
30._GU_261_/P___
______GG____GG____________GG
31._GU_261_/P___
______GG____GG____________GG
32._GU_261_/P___
______GG____GG____________GG
33._GU_261_/P___
______GG____GG____________GG
34._GU_261_/P___
______GG____GG____________GG
35._GU_261_/P___
______GG____GG____________GG
36._GU_261_/P___
______AG____GG____________GG
37._GU_261_/P___
____________CC______________
38._GU_261_/P___
______GG__GGCCCC__AA____AACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCGGTTCCACTTCCAGAACCAA
1._GU_261_/P___
CC__________CCAC__CC__AA____
2._GU_261_/P___
____AA________AC__CC__AA____
3._GU_261_/P___
____AG________AC__CC__AA____
4._GU_261_/P___
____AG________AC__CC__AA____
5._GU_261_/P___
____AG________AC__CC__AA____
6._GU_261_/P___
____AG________AC__CC__AA____
7._GU_261_/P___
____AG________AC__CC__AA____
8._GU_261_/P___
____AG________AC__CC__AA____
9._GU_261_/P___
____AG________AC__CC__AA____
10._GU_261_/P___
____AG________AC__CC__AA____
11._GU_261_/P___
____AG________AC__CC__AA____
12._GU_261_/P___
____AG________AC__CC__AA____
13._GU_261_/P___
____AG________AC__CC__AA____
14._GU_261_/P___
____AG________AC__CC__AA____
15._GU_261_/P___
____AG________AC__CC__AA____
16._GU_261_/P___
____AG________AC__CC__AA____
17._GU_261_/P___
____AG________AC__CC__AA____
18._GU_261_/P___
____AG________AC__CC__AA____
19._GU_261_/P___
____AG________AC__CC__AA____
20._GU_261_/P___
____AG________AC__CC__AA____
21._GU_261_/P___
____AG________AC__CC__AA____
22._GU_261_/P___
____AG________AC__CC__AA____
23._GU_261_/P___
____AG________AC__CC__AA____
24._GU_261_/P___
____AG________AC__CC__AA____
25._GU_261_/P___
____AG________AC__CC__AA____
26._GU_261_/P___
____AG________AC__CC__AA____
27._GU_261_/P___
____AG________AC__CC__AA____
28._GU_261_/P___
____AG________AC__CC__AA____
29._GU_261_/P___
____AG________AC__CC__AA____
30._GU_261_/P___
____AG________AC__CC__AA____
31._GU_261_/P___
____AG________AC__CC__AA____
32._GU_261_/P___
____AG________AC__CC__AA____
33._GU_261_/P___
____AG________AC__CC__AA____
34._GU_261_/P___
____AG________AC__CC________
35._GU_261_/P___
____AG________AC__CC__AA____
36._GU_261_/P___
____AG________AC__CC__AA____
37._GU_261_/P___
____________CCAC__CC________
38._GU_261_/P___
____________GGAC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAACCGGGGGGCCAAAATTGGCC
1._GU_261_/P___
____GG____GG______AA________
2._GU_261_/P___
__________GG______AA________
3._GU_261_/P___
__________GG______AA________
4._GU_261_/P___
__________GG______AA________
5._GU_261_/P___
__________GG______AA________
6._GU_261_/P___
__________GG______AA________
7._GU_261_/P___
__________GG______AA________
8._GU_261_/P___
__________GG______AA________
9._GU_261_/P___
__________GG______AA________
10._GU_261_/P___
__________GG______AA________
11._GU_261_/P___
__________GG______AA________
12._GU_261_/P___
__________GG______AA________
13._GU_261_/P___
__________GG______AA________
14._GU_261_/P___
__________GG______AA________
15._GU_261_/P___
__________GG______AA________
16._GU_261_/P___
__________GG______AA________
17._GU_261_/P___
__________GG______AA________
18._GU_261_/P___
__________GG______AA________
19._GU_261_/P___
__________GG______AA________
20._GU_261_/P___
__________GG______AA________
21._GU_261_/P___
__________GG______AA________
22._GU_261_/P___
__________GG______AA________
23._GU_261_/P___
__________GG______AA________
24._GU_261_/P___
__________GG______AA________
25._GU_261_/P___
__________GG______AA________
26._GU_261_/P___
__________GG______AA________
27._GU_261_/P___
__________GG______AA________
28._GU_261_/P___
__________GG______AA________
29._GU_261_/P___
__________GG______AA________
30._GU_261_/P___
__________GG______AA________
31._GU_261_/P___
__________GG______AA________
32._GU_261_/P___
__________GG______AA________
33._GU_261_/P___
__________GG______AA________
34._GU_261_/P___
__________GG______AA________
35._GU_261_/P___
__________GG______AA________
36._GU_261_/P___
__________GG______AA________
37._GU_261_/P___
__________GG______AA________
38._GU_261_/P___
____GG____GG______AA________
 57 58 59            
_Input profile
TTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._GU_261_/P___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_261_/P RUQ_1370

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_261_/P RUQ_1370

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

4._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

5._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

6._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

7._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

8._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

9._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

10._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

11._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

12._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

13._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

14._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

15._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

16._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

17._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

18._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

19._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

20._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

21._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

22._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

23._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

24._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

25._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

26._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

27._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

28._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

29._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

30._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

31._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

32._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

33._GU_261_/P

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

34._GU_261_/P

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

35._GU_261_/P

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

36._GU_261_/P

92.3 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

37._GU_261_/P RUQ_1370

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

38._GU_261_/P RUQ_1370

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13