SNP Profiles of ICS 39 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	TT	CC	GG	AG	TT	GG	TT	AA	GG	CC	TT	AG	CC
1._RUQ_1089	__	__	CC	__	__	__	__	TT	__	__	CC	__	AG	__
2._RUQ_1089	__	__	GG	__	__	__	__	AA	__	__	__	__	AG	__
3._GC-01-85-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
4._GC-01-085-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
5._GC-01-85-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
6._GC-01-85-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
7._GC-01-85-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
8._GC-01-085-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
9._GC-01-085-5-02	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
10._ICS_39_Fld#_30_Plt#_2	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__
11._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
12._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
13._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
14._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
15._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
16._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
17._ICS_39	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
18._ICS_39	__	__	GG	__	__	__	__	GT	__	__	CT	__	AA	__
19._ICS_39	__	__	GG	__	__	__	__	GT	__	__	CT	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CT	CT	AG	CG	GG	CC	TT	AT	AC	TT	TT	GG	GG
1._RUQ_1089	__	__	__	AG	__	__	CC	__	__	__	__	__	__	GG
2._RUQ_1089	__	__	__	AG	__	GG	GG	CC	__	AC	__	__	GG	CC
3._GC-01-85-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
4._GC-01-085-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
5._GC-01-85-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
6._GC-01-85-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
7._GC-01-85-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
8._GC-01-085-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
9._GC-01-085-5-02	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
10._ICS_39_Fld#_30_Plt#_2	__	__	__	AA	__	GG	CG	CC	__	AC	__	__	AG	AA
11._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
12._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
13._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
14._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
15._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
16._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
17._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
18._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
19._ICS_39	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CG	AA	CC	AG	TT	CC	AA	TT	GG	AG	CC	CC	AA
1._RUQ_1089	__	__	AA	__	__	__	__	AA	__	GG	__	CC	__	__
2._RUQ_1089	__	__	__	__	__	__	GG	AA	__	GG	__	CC	__	__
3._GC-01-85-5-02	__	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
4._GC-01-085-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
5._GC-01-85-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
6._GC-01-85-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
7._GC-01-85-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
8._GC-01-085-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
9._GC-01-085-5-02	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
10._ICS_39_Fld#_30_Plt#_2	__	__	__	__	__	__	GG	AC	__	CG	__	CC	__	__
11._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
12._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
13._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
14._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
15._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
16._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
17._ICS_39	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
18._ICS_39	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
19._ICS_39	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	GG	AA	TT	AG	GT	AG	CT	AC	AT	GG	GG	CC
1._RUQ_1089	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
2._RUQ_1089	__	__	GG	__	__	AG	__	__	__	AC	__	__	__	__
3._GC-01-85-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
4._GC-01-085-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
5._GC-01-85-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
6._GC-01-85-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
7._GC-01-85-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
8._GC-01-085-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
9._GC-01-085-5-02	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
10._ICS_39_Fld#_30_Plt#_2	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
11._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
12._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
13._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
14._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
15._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
16._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
17._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
18._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
19._ICS_39	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__

	57	58	59
_Input profile	TT	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1089	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1089	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-85-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-085-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-85-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-85-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-85-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-085-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-085-5-02	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_39_Fld#_30_Plt#_2	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._ICS_39	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.380 LCT
0.051 Nan
0.464

1._ICS_39 RUQ_1089

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_39 RUQ_1089

64.7 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._ICS_39 GC-01-85-5-02

57.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

4._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

6._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

7._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

8._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

10._ICS_39 ICS_39_Fld#_30_Plt#_2

55.9 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

11._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

12._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

13._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

14._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

15._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

16._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

17._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

18._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

19._ICS_39

53.8 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13