SNP Profiles of ICS 40 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GT	GT	AC	GT	CT	TT	AA	CC
1._RUQ_1432	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
2._RUQ_1432	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
3._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
4._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
5._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
6._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
7._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
8._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
9._ICS_40	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
10._ICS_40	__	__	GG	__	__	__	__	GT	__	__	CT	__	AA	__
11._ICS_40	__	__	CG	__	__	__	__	__	__	__	CT	__	AA	__
12._ICS_40	__	__	GG	__	__	__	__	GT	__	__	CT	__	AA	__
13._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
14._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
15._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
16._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
17._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
18._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
19._GC-01-106-6-03	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
20._GC-01-106-6-03	__	__	CG	__	__	__	__	__	__	__	CT	__	AA	__
21._RUQ_1432	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__
22._ICS_40	__	__	GG	__	__	__	__	GT	__	__	CC	__	GG	__
23._GC-01-106-6-03	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__
24._ICS_40	__	__	CC	__	__	__	__	GG	__	__	CC	__	GG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CT	CT	AA	CG	GG	CG	TT	AA	CC	CT	CT	AG	GT
1._RUQ_1432	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
2._RUQ_1432	__	__	__	AA	__	__	CG	__	__	CC	__	__	AG	GT
3._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
4._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
5._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
6._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
7._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
8._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
9._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
10._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
11._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
12._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
13._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
14._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
15._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
16._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
17._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
18._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
19._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
20._GC-01-106-6-03	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
21._RUQ_1432	__	__	__	AA	__	GG	CG	CC	__	CC	__	__	AG	AC
22._ICS_40	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GG
23._GC-01-106-6-03	__	__	CC	AA	__	GG	CC	CC	__	AC	__	__	AG	GT
24._ICS_40	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CG	AG	CG	AG	TT	CC	AC	AT	CC	AG	CC	CT	AC
1._RUQ_1432	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
2._RUQ_1432	CT	__	__	__	__	__	CC	AA	__	CC	__	CC	__	__
3._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
4._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
5._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
6._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
7._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
8._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
9._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
10._ICS_40	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
11._ICS_40	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
12._ICS_40	__	__	AG	__	__	__	__	__	__	CC	__	CC	__	__
13._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
14._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
15._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
16._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
17._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
18._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
19._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
20._GC-01-106-6-03	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
21._RUQ_1432	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__	__
22._ICS_40	__	__	AA	__	__	__	__	CC	__	CC	__	AC	__	__
23._GC-01-106-6-03	TT	__	AA	__	__	__	CC	CC	__	GG	__	AA	__	__
24._ICS_40	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	AG	AC	TT	AG	GT	AG	CT	AC	AT	GT	GG	CC
1._RUQ_1432	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
2._RUQ_1432	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
3._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
4._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
5._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
6._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
7._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
8._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
9._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
10._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
11._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
12._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
13._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
14._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
15._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
16._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
17._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
18._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
19._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
20._GC-01-106-6-03	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
21._RUQ_1432	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
22._ICS_40	__	__	__	__	__	AA	__	__	__	CC	__	__	__	__
23._GC-01-106-6-03	__	__	GG	__	__	AG	__	__	__	AC	__	__	__	__
24._ICS_40	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__

	57	58	59
_Input profile	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1432	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1432	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_1432	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-01-106-6-03	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_40	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_40 RUQ_1432

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.489 Cri
0.505

1._ICS_40 RUQ_1432

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_40 RUQ_1432

96.7 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 4

Dapeng Zhang, 2016

4._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 1

Dapeng Zhang, 2016

5._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 6

Dapeng Zhang, 2016

6._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 11

Dapeng Zhang, 2016

7._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 13

Dapeng Zhang, 2016

8._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 4 > FP

Dapeng Zhang, 2016

9._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 6 > FP

Dapeng Zhang, 2016

10._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0201 2A

Dapeng Zhang, 2016

11._ICS_40

95.8 %
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 16

Dapeng Zhang, 2016

12._ICS_40

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block2

Dapeng Zhang, 2016

13._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL6

Notes: PL6 FP4

15._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL4

Notes: PL4 FP3

16._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

17._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

18._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

19._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

20._ICS_40 GC-01-106-6-03

92.5 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

21._ICS_40 RUQ_1432

73.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_40

61.5 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E287 T4

Dapeng Zhang, 2016

23._ICS_40 GC-01-106-6-03

57.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

24._ICS_40

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 9

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13