SNP Profiles of SCA 6   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAAGGGCCATAAGGAGGGAA
1._RUQ_234
CCCCGGCCAAAGGGCCATAAGGAGGGAA
2._MITC-000343
CCCCGGCCAAAGGGCCATAAGGAGGGAA
3._MITC-000344
CCCCGGCCAAAGGGCCATAAGGAGGGAA
4._MITC-000345
CCCCGGCCAAAGGGCCATAAGGAGGGAA
5._MITC-000347
CCCCGGCCAAAGGGCCATAAGGAGGGAA
6._MITC-000348
CCCCGGCCAAAGGGCCATAAGGAGGGAA
7._MITC-000376
CCCCGGCCAAAGGGCCATAAGGAGGGAA
8._MITC-000452
CCCCGGCCAAAGGGCCATAAGGAGGGAA
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CCACAGACAAGGAGCCATAGAGAAGGAC
10._SCA_6_Fld#_16_Plt#_1
CCACAGACAAGGAGCCATAGAGAAGGAC
11._RUQ_234B
____________GG______________
12._RUQ_234
____________GG______________
13._SCA6
__________CT________GG______
14._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
15._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
16._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
17._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
18._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
19._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
20._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
21._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
22._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
23._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
24._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
25._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
26._GC-01-026-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
27._GC-01-26-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
28._GC-01-26-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
29._GC-01-26-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
30._SCA_6
__________CTGG__AT__________
31._GC-01-26-2-03
CCCCGGCCTTCTGGGGATTTGGCTCCTT
32._SCA_6
__________CTGG__AT__________
33._SCA_6
__________CTGG__AT__________
34._SCA_6
__________CTGG__AT__________
35._SCA_6
__________CTGG__AT__________
36._SCA_6
__________CTGG__AT__________
37._SCA_6
__________CTGG__AT__________
38._SCA_6
__________CTGG__AT__________
39._SCA_6
__________CTGG__AT__________
40._SCA_6
__________CTGG__AT__________
41._SCA_6
__________CTGG__AT__________
42._SCA_6
__________CTGG__AT__________
43._SCA_6
__________CTGG__AT__________
44._SCA_6
__________CTGG__AT__________
45._SCA_6
__________CTGG__AT__________
46._SCA_6
__________CTGG__AT__________
47._SCA_6
__________CTGG__AT__________
48._RUQ_234
__________CTGG__AT__________
49._SCA_6
__________CTGG__AT__________
50._SCA_6
__________CTGG__AT__________
51._SCA_6
__________CCGG__AT__________
52._SCA_6
__________CTGG__AT__________
53._SCA_6
__________CTGG__AT__________
54._SCA_6
__________CTGG__AT__________
55._RUQ_234
__________CT__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAGGGCCAAGGGGACAGGGAGCCAA
1._RUQ_234
AACCAGGGCCAAGGGGACAGGGAGCCAA
2._MITC-000343
AACCAGGGCCAAGGGGACAGGGAGCCAA
3._MITC-000344
AACCAGGGCCAAGGGGACAGGGAGCCAA
4._MITC-000345
AACCAGGGCCAAGGGGACAGGGAGCCAA
5._MITC-000347
AACCAGGGCCAAGGGGACAGGGAGCCAA
6._MITC-000348
AACCAGGGCCAAGGGGACAGGGAGCCAA
7._MITC-000376
AACCAGGGCCAAGGGGACAGGGAGCCAA
8._MITC-000452
AACCAGGGCCAAGGGGACAGGGAGCCAA
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AGACGGAGACAGAGAGAAGGCGAGACAG
10._SCA_6_Fld#_16_Plt#_1
AGACGGAGACAGAGAGAAGGCGAGACAG
11._RUQ_234B
__GG____________AC__CC______
12._RUQ_234
__GG____________AC__CC______
13._SCA6
______________CCCC__GG____TT
14._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
15._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
16._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
17._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
18._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
19._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
20._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
21._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
22._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
23._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
24._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
25._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
26._GC-01-026-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
27._GC-01-26-2-03
TTGGCT__CCAA__CCACCTCCAGGGTT
28._GC-01-26-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
29._GC-01-26-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
30._SCA_6
__GGCT__CC______ACCTCCAGGGTT
31._GC-01-26-2-03
TTGGCT__CCAACCCCACCTCCAGGGTT
32._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
33._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
34._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
35._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
36._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
37._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
38._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
39._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
40._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
41._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
42._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
43._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
44._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
45._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
46._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
47._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
48._RUQ_234
__GGCT__CC__CC__ACCTCCAGGGTT
49._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
50._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
51._SCA_6
__GGTT__CC__CC__ACTTCCAGGGTT
52._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
53._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
54._SCA_6
__GGCT__CC__CC__ACCTCCAGGGTT
55._RUQ_234
__GG__CC______CCCCCTCCAGGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCGGAAAGAGCCAAATAAAAGG
1._RUQ_234
GGAAGGCCGGAAAGAGCCAAATAAAAGG
2._MITC-000343
GGAAGGCCGGAAAGAGCCAAATAAAAGG
3._MITC-000344
GGAAGGCCGGAAAGAGCCAAATAAAAGG
4._MITC-000345
GGAAGGCCGGAAAGAGCCAAATAAAAGG
5._MITC-000347
GGAAGGCCGGAAAGAGCCAAATAAAAGG
6._MITC-000348
GGAAGGCCGGAAAGAGCCAAATAAAAGG
7._MITC-000376
GGAAGGCCGGAAAGAGCCAAATAAAAGG
8._MITC-000452
GGAAGGCCGGAAAGAGCCAAATAAAAGG
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AGATGGACGGAAAGGGCGACATATAGGG
10._SCA_6_Fld#_16_Plt#_1
AGATGGACGGAAAGGGCGACATATAGGG
11._RUQ_234B
__________AA____________AA__
12._RUQ_234
__________AA____________AA__
13._SCA6
____GGCCGGAA______________GG
14._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
15._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
16._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
17._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
18._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
19._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
20._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
21._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
22._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
23._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
24._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAAAGG
25._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTAT__AAGG
26._GC-01-026-2-03
CCTTGGCCCCAAAGCTCCTTATAAGGGG
27._GC-01-26-2-03
CCCCGGCCCCAACCCTCCTTATAAAAGG
28._GC-01-26-2-03
CCCCGGCCCCAACCCTCCTTATAAAAGG
29._GC-01-26-2-03
CCCCGGCCCCAACCCTCCTTATAAAAGG
30._SCA_6
CC____CCCCAA__CTCC____AA____
31._GC-01-26-2-03
CCCCGGCCCCAACCCTCCTTATAA__GG
32._SCA_6
CC____CCCCAA__CTCC____AA____
33._SCA_6
CC____CCCCAA__CTCC____AA____
34._SCA_6
CC____CCCCAA__CTCC____AA____
35._SCA_6
CC____CCCCAA__CTCC____AA____
36._SCA_6
CC____CCCCAA__CTCC____AA____
37._SCA_6
CC____CCCCAA__CTCC____AA____
38._SCA_6
CC____CCCCAA__CTCC____AA____
39._SCA_6
CC____CCCCAA__CTCC____AA____
40._SCA_6
CC____CCCCAA__CTCC____AA____
41._SCA_6
CC____CCCCAA__CTCC____AA____
42._SCA_6
CC____CCCCAA__CTCC____AA____
43._SCA_6
CC____CCCCAA__CTCC____AA____
44._SCA_6
CC____CCCCAA__CTCC____AA____
45._SCA_6
CC____CCCCAA__CTCC____AA____
46._SCA_6
CC____CCCCAA__CTCC____AA____
47._SCA_6
CC____CCCCAA__TTCC____AA____
48._RUQ_234
CC____CCCCAA__CTCC____AA____
49._SCA_6
CC____CCCCAA__CTCC____AA____
50._SCA_6
CC____CCCCAA__CTCC____AA____
51._SCA_6
CC____CCCCAA__TTCC____AA____
52._SCA_6
CC____CCCCAA__CTCC____AA____
53._SCA_6
CC____CCCCAA__CTCC____AA____
54._SCA_6
CC____CCCCAA__CTCC__________
55._RUQ_234
____GGCCCCAA__CT________AAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAAGAGAACCGGAAAAAACCGGCG
1._RUQ_234
AAGGAAAGAGAACCGGAAAAAACCGGCG
2._MITC-000343
AAGGAAAGAGAACCGGAAAAAACCGGCG
3._MITC-000344
AAGGAAAGAGAACCGGAAAAAACCGGCG
4._MITC-000345
AAGGAAAGAGAACCGGAAAAAACCGGCG
5._MITC-000347
AAGGAAAGAGAACCGGAAAAAACCGGCG
6._MITC-000348
AAGGAAAGAGAACCGGAAAAAACCGGCG
7._MITC-000376
AAGGAAAGAGAACCGGAAAAAACCGGCG
8._MITC-000452
AAGGAAAGAGAACCGGAAAAAACCGGCG
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AAAGAGAGAGATCGAGACACAGACAGCG
10._SCA_6_Fld#_16_Plt#_1
AAAGAGAGAGATCGAGACACAGACAGCG
11._RUQ_234B
__________________AA______CG
12._RUQ_234
__________________AA______CG
13._SCA6
AACC________GG____________CG
14._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
15._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
16._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
17._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
18._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
19._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
20._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
21._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
22._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
23._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
24._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
25._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
26._GC-01-026-2-03
AACCAAAGAGAAGG__AAAAAAGGGGCG
27._GC-01-26-2-03
AACCAAAGAGAAGGCCAAAAAAGGGGCG
28._GC-01-26-2-03
AACCAAAGAGAAGGCCAAAAAAGGGGCG
29._GC-01-26-2-03
AACCAAAGAGAAGGCCAAAAAAGGGGCG
30._SCA_6
AA______AG________AA__GG__CG
31._GC-01-26-2-03
AACCAAAGAGAAGGCCAAAAAAGGGGCG
32._SCA_6
AA______AG________AA__GG__CG
33._SCA_6
AA______AG________AA__GG__CG
34._SCA_6
AA______AG________AA__GG__CG
35._SCA_6
AA______AG________AA__GG__CG
36._SCA_6
AA______AG________AA__GG__CG
37._SCA_6
AA______AG________AA__GG__CG
38._SCA_6
AA______AG________AA__GG__CG
39._SCA_6
AA______AG________AA__GG__CG
40._SCA_6
AA______AG________AA__GG__CG
41._SCA_6
AA______AG________AA__GG__CG
42._SCA_6
AA______AG________AA__GG__CG
43._SCA_6
AA______AG________AA__GG__CG
44._SCA_6
AA______AG________AA__GG__CG
45._SCA_6
AA______AG________AA__GG__CG
46._SCA_6
AA______AG________AA__GG__CG
47._SCA_6
AA______AG________AA__GG__CG
48._RUQ_234
AA______AG________AA__GG__CG
49._SCA_6
AA______AG________AA__GG__CG
50._SCA_6
AA______AG________AA__GG__CG
51._SCA_6
AA______AG________AA__GG__CG
52._SCA_6
AA______AG________AA__GG__CG
53._SCA_6
AA______AG________AA__GG__CG
54._SCA_6
AA______AG________AA__GG__CG
55._RUQ_234
AA__________GG____AA__GG__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGAAAAAACCAAAAAACCAACCGG
1._RUQ_234
CCGGGGAAAAAACCAAAAAACCAACCGG
2._MITC-000343
CCGGGGAAAAAACCAAAAAACCAACCGG
3._MITC-000344
CCGGGGAAAAAACCAAAAAACCAACCGG
4._MITC-000345
CCGGGGAAAAAACCAAAAAACCAACCGG
5._MITC-000347
CCGGGGAAAAAACCAAAAAACCAACCGG
6._MITC-000348
CCGGGGAAAAAACCAAAAAACCAACCGG
7._MITC-000376
CCGGGGAAAAAACCAAAAAACCAACCGG
8._MITC-000452
CCGGGGAAAAAACCAAAAAACCAACCGG
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ACGGAGAAAGAACCAGAAAAACAAACCG
10._SCA_6_Fld#_16_Plt#_1
ACGGAGAAAGAACCAGAAAAACAAACCG
11._RUQ_234B
CC__CC______GGAA________CCCC
12._RUQ_234
CC__CC______GGAA________CCCC
13._SCA6
CC__CC____________TT________
14._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
15._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
16._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
17._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
18._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
19._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
20._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
21._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
22._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
23._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
24._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
25._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
26._GC-01-026-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
27._GC-01-26-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
28._GC-01-26-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
29._GC-01-26-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
30._SCA_6
CC____TT____GG______________
31._GC-01-26-2-03
CCCCCCTTAAAAGGAATTTTGGTTCCCC
32._SCA_6
CC____TT____GG______________
33._SCA_6
CC____TT____GG______________
34._SCA_6
CC____TT____GG______________
35._SCA_6
CC____TT____GG______________
36._SCA_6
CC____TT____GG______________
37._SCA_6
CC____TT____GG______________
38._SCA_6
CC____TT____GG______________
39._SCA_6
CC____TT____GG______________
40._SCA_6
CC____TT____GG______________
41._SCA_6
CC____TT____GG______________
42._SCA_6
CC____TT____GG______________
43._SCA_6
CC____TT____GG______________
44._SCA_6
CC____TT____GG______________
45._SCA_6
CC____TT____GG______________
46._SCA_6
CC____TT____GG______________
47._SCA_6
CC____TT____GG______________
48._RUQ_234
CC____TT____GG______________
49._SCA_6
CC____TT____GG______________
50._SCA_6
CC____TT____GG______________
51._SCA_6
CC____TT____GG______________
52._SCA_6
CC____TT____GG______________
53._SCA_6
CC____TT____GG______________
54._SCA_6
CC____TT____GG______________
55._RUQ_234
CC__CCTT____GGAATT____TTCC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
1._RUQ_234
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
2._MITC-000343
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
3._MITC-000344
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
4._MITC-000345
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
5._MITC-000347
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
6._MITC-000348
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
7._MITC-000376
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
8._MITC-000452
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
9._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AGCGAGGGAGCCAGCCGGATAGAGX_XX_X
10._SCA_6_Fld#_16_Plt#_1
AGCGAGGGAGCCAGCCGGATAGAGX_XX_X
11._RUQ_234B
__CC____GG____________AAX_XX_X
12._RUQ_234
__CC____GG____________AAX_XX_X
13._SCA6
AAGGTT______________CC__X_XX_X
14._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
15._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
16._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
17._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
18._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
19._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
20._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
21._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
22._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
23._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
24._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
25._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
26._GC-01-026-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
27._GC-01-26-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
28._GC-01-26-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
29._GC-01-26-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
30._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
31._GC-01-26-2-03
AACCTTCGGGCCCCCCCCTTCCAAX_XX_X
32._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
33._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
34._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
35._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
36._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
37._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
38._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
39._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
40._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
41._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
42._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
43._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
44._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
45._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
46._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
47._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
48._RUQ_234
__CCTT______CCCC__TTCCAAX_XX_X
49._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
50._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
51._SCA_6
__CCTT______CTCC__TTCCAAX_XX_X
52._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
53._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
54._SCA_6
__CCTT______CCCC__TTCCAAX_XX_X
55._RUQ_234
__CCTT____CC__________AAX_XX_X

Input profile: SCA_6 MITC-000349

 
 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

1._SCA_6 RUQ_234

identical
82 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._SCA_6 MITC-000343

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

3._SCA_6 MITC-000344

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

4._SCA_6 MITC-000345

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

5._SCA_6 MITC-000347

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

6._SCA_6 MITC-000348

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

7._SCA_6 MITC-000376

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

8._SCA_6 MITC-000452

identical
82 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

9._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

65.9 %
82 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

10._SCA_6 SCA_6_Fld#_16_Plt#_1

65.9 %
82 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

11._SCA_6 RUQ_234B

64.7 %
17 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._SCA_6 RUQ_234

64.7 %
17 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

13._SCA_6 SCA6

56.8 %
22 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

14._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

17._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._SCA_6 GC-01-026-2-03

52.5 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

25._SCA_6 GC-01-026-2-03

51.9 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

26._SCA_6 GC-01-026-2-03

51.3 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._SCA_6 GC-01-26-2-03

51.3 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

28._SCA_6 GC-01-26-2-03

50.6 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

29._SCA_6 GC-01-26-2-03

50.6 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

30._SCA_6

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

31._SCA_6 GC-01-26-2-03

50 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

32._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

33._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

34._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

35._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

36._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

37._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

38._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

39._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

40._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

41._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

42._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

43._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

44._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016

45._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

46._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

47._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

48._SCA_6 RUQ_234

48.6 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

49._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

50._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

51._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

52._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

53._SCA_6

48.6 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

54._SCA_6

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

55._SCA_6 RUQ_234

43.1 %
36 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998