SNP Profiles of SCA 11   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAGGGGCCAAAAAGGGGGAA
1._RUQ_1686
CCCCGGCCAAGGGGCCATAAGGAGGGAA
2._RUQ_1686
____________GG______________
3._SCA_11
__________CCGG__AA__________
4._RUQ_374
__________CCGG__AA__________
5._RUQ_374
__________CC__GG____AG______
6._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
7._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
8._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
9._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
10._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
11._SCA_11
__________CCGG__AT__________
12._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
13._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
14._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
15._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
16._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
17._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
18._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
19._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
20._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
21._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
22._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
23._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
24._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
25._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
26._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
27._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
28._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
29._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
30._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
31._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
32._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
33._SCA_11
__________CCGG__AT__________
34._SCA_11
__________CCGG__AT__________
35._SCA_11
__________CCGG__AT__________
36._SCA_11
__________CCGG__AT__________
37._SCA_11
__________CCGG__AT__________
38._SCA_11
__________CCGG__AT__________
39._SCA_11
__________CCGG__AT__________
40._SCA_11
__________CCGG__AT__________
41._SCA_11
__________CCGG__AT__________
42._SCA_11
__________CCGG__AT__________
43._SCA_11
__________CCGG__AT__________
44._SCA_11
__________CCGG__AT__________
45._SCA_11
__________CCGG__AT__________
46._SCA_11
__________CCGG__AT__________
47._SCA_11
__________CCGG__AT__________
48._SCA_11
__________CCGG__AT__________
49._SCA_11
__________CCGG__AT__________
50._SCA_11
__________CCGG__AT__________
51._SCA_11
__________CCGG__AT__________
52._SCA_11
__________CCGG__AT__________
53._SCA_11
__________CCGG__AT__________
54._SCA_11
__________CCGG__AT__________
55._SCA_11
__________CCGG__AT__________
56._SCA_11
__________CCGG__AT__________
57._SCA_11
__________CCGG__AT__________
58._RUQ_1686
__________CC________GG______
59._SCA_11
__________CTAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAGGCCAAAGGGACAAGGAACCAA
1._RUQ_1686
AACCAAAGCCAAGGGGAAAAGGAGCCAA
2._RUQ_1686
__GG____________AA__CC______
3._SCA_11
__GTTT__CC__CT__ACTTCCAAGGTT
4._RUQ_374
__GTTT__CC__CT__ACTTCCAGGGTT
5._RUQ_374
__GT__CC______CCCCTTCCAAGGTT
6._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
7._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
8._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
9._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
10._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
11._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
12._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
13._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
14._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
15._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
16._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
17._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
18._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
19._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
20._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
21._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
22._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
23._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
24._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
25._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
26._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
27._GC-01-117-6-14
TTGGTT__CCAACCCCAATTCCAGGGTT
28._GC-08-157-3-56
TTGGTTTT__AACCCCAATTCCAGGGTT
29._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
30._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
31._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
32._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
33._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
34._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
35._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
36._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
37._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
38._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
39._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
40._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
41._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
42._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
43._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
44._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
45._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
46._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
47._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
48._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
49._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
50._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
51._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
52._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
53._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
54._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
55._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
56._SCA_11
__GGTT__CC__CC__AATTCCAGGGTT
57._SCA_11
__GGTT______CC__AATTCCAGGGTT
58._RUQ_1686
______________CCAC__GG____CC
59._SCA_11
__GGCC__AA__TT__CCCTGGAATTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCCGAGGGAGCGAAAAAAAAGG
1._RUQ_1686
GGAAGGCCGGAAGGAACGAAATAAAGGG
2._RUQ_1686
__________AA____________AG__
3._SCA_11
CC____CCCGAG__CTCG____AA____
4._RUQ_374
CC____CCCGAG__CTCG____AA____
5._RUQ_374
____GGCCCGAG__CT________AAGG
6._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
7._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
8._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
9._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
10._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
11._SCA_11
CC____CCCCAA__TTCG____AA____
12._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
13._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
14._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
15._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
16._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
17._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
18._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
19._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
20._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
21._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
22._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
23._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
24._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
25._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
26._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
27._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
28._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
29._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
30._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
31._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
32._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
33._SCA_11
CC____CCCCAA__TTCG____AA____
34._SCA_11
CC____CCCCAA__TTCG____AA____
35._SCA_11
CC____CCCCAA__TTCG____AA____
36._SCA_11
CC____CCCCAA__TTCG____AA____
37._SCA_11
CC____CCCCAA__TTCG____AA____
38._SCA_11
CC____CCCCAA__TTCG____AA____
39._SCA_11
CC____CCCCAA__TTCG____AA____
40._SCA_11
CC____CCCCAA__TTCG____AA____
41._SCA_11
CC____CCCCAA__TTCG____AA____
42._SCA_11
CC____CCCCAA__TTCG____AA____
43._SCA_11
CC____CCCCAA__TTCG____AA____
44._SCA_11
CC____CCCCAA__TTCG____AA____
45._SCA_11
CC____CCCCAA__TTCG____AA____
46._SCA_11
CC____CCCCAA__TTCG____AA____
47._SCA_11
CC____CCCCAA__TTCG____AA____
48._SCA_11
CC____CCCCAA__TTCG____AA____
49._SCA_11
CC____CCCCAA__TTCG____AA____
50._SCA_11
CC____CCCCAA__TTCG____AA____
51._SCA_11
CC____CCCCAA__TTCG____AA____
52._SCA_11
CC____CCCCAA__TTCG____AA____
53._SCA_11
CC____CCCCAA__TTCG____AA____
54._SCA_11
CC____CCCCAA__TTCG____AA____
55._SCA_11
CC____CCCCAA__TTCG____AA____
56._SCA_11
CC____CCCCAA__TTCG____AA____
57._SCA_11
CC____CCCCAA__TTCG____AA____
58._RUQ_1686
____GGAACGAG______________GG
59._SCA_11
CT____ACCCAA__CTGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAGGAAAAGGACAAAACCGGCCCC
1._RUQ_1686
AAGGAGAGAGAAGGAAAAAACCGGCGCC
2._RUQ_1686
________________AA______CGCC
3._SCA_11
AA______AA______AA__GG__CCCC
4._RUQ_374
AA______AA______AA__GG__CCCC
5._RUQ_374
AA______________AA__GG__CCCC
6._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
7._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
8._GC-08-157-3-56
AACCAGAGAGAA__AAAAAA__GGCGCC
9._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
10._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
11._SCA_11
AA______AG______AA__GG__CGCC
12._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
13._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
14._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
15._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
16._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
17._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
18._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
19._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
20._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
21._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
22._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
23._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
24._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
25._GC-08-157-3-56
AACC__AGAGAA__AAAAAAGGGGCGCC
26._GC-08-157-3-56
AACCAGAG__AA__AAAAAAGGGGCGCC
27._GC-01-117-6-14
AACCAGAGAGAA__AAAAAAGGGGCGCC
28._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
29._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
30._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
31._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGG__CGCC
32._GC-08-157-3-56
AACCAGAGAGAA__AAAAAAGGGGCGCC
33._SCA_11
AA______AG______AA__GG__CGCC
34._SCA_11
AA______AG______AA__GG__CGCC
35._SCA_11
AA______AG______AA______CGCC
36._SCA_11
AA______AG______AA__GG__CGCC
37._SCA_11
AA______AG______AA__GG__CGCC
38._SCA_11
AA______AG______AA__GG__CGCC
39._SCA_11
AA______AG______AA__GG__CGCC
40._SCA_11
AA______AG______AA__GG__CGCC
41._SCA_11
AA______AG______AA__GG__CGCC
42._SCA_11
AA______AG______AA__GG__CGCC
43._SCA_11
AA______AG______AA__GG__CGCC
44._SCA_11
AA______AG______AA__GG__CGCC
45._SCA_11
AA______AG______AA__GG__CGCC
46._SCA_11
AA______AG______AA__GG__CGCC
47._SCA_11
AA______AG______AA__GG__CGCC
48._SCA_11
AA______AG______AA__GG__CGCC
49._SCA_11
AA______AG______AA__GG__CGCC
50._SCA_11
AA______AG______AA__GG__CGCC
51._SCA_11
AA______AG______AA__GG__CGCC
52._SCA_11
AA______AG______AA__GG__CGCC
53._SCA_11
AA______AG______AA__GG__CGCC
54._SCA_11
AA______AG______AA__GG__CGCC
55._SCA_11
AA______AG______AA__GG__CGCC
56._SCA_11
AA______________AA__GG__CGCC
57._SCA_11
AA______AG______AA__GG__CGCC
58._RUQ_1686
ATCT____________________GGAA
59._SCA_11
AT______GG______CC__TT__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAAAGAACCAAAAAACCAACCGGAA
1._RUQ_1686
GGGGAAAAAACCAAAAAACCAACCGGAA
2._RUQ_1686
__CC______GGAA________CCCC__
3._SCA_11
____TT____GG________________
4._RUQ_374
____TT____GG________________
5._RUQ_374
__CCTT____GGAATT____TTCC____
6._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
7._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
8._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
9._GC-08-157-3-56
CCCCTTAAAAGGAATT__GGTTCCCCAA
10._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
11._SCA_11
____TT____GG________________
12._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
13._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
14._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
15._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
16._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
17._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
18._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
19._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
20._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
21._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
22._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
23._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
24._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
25._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
26._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
27._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
28._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
29._GC-08-157-3-56
CCCCTTAA__GGAATTTTGGTTCCCCAA
30._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
31._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
32._GC-08-157-3-56
CCCCTTAA__GGAATTTTGGTTCCCCAA
33._SCA_11
____TT____GG________________
34._SCA_11
____TT____GG________________
35._SCA_11
____TT____GG________________
36._SCA_11
____TT____GG________________
37._SCA_11
____TT____GG________________
38._SCA_11
____TT____GG________________
39._SCA_11
____TT____GG________________
40._SCA_11
____TT____GG________________
41._SCA_11
____TT____GG________________
42._SCA_11
____TT____GG________________
43._SCA_11
____TT____GG________________
44._SCA_11
____TT____GG________________
45._SCA_11
____TT____GG________________
46._SCA_11
____TT____GG________________
47._SCA_11
____TT____GG________________
48._SCA_11
____TT____GG________________
49._SCA_11
____TT____GG________________
50._SCA_11
____TT____GG________________
51._SCA_11
____TT____GG________________
52._SCA_11
____TT____GG________________
53._SCA_11
____TT____GG________________
54._SCA_11
____TT____GG________________
55._SCA_11
____TT____GG________________
56._SCA_11
____TT____GG________________
57._SCA_11
____TT____GG________________
58._RUQ_1686
__CC____________TT________GG
59._SCA_11
____CC____GG________________
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
GGAAGGAGCCGGCCGGTTGGAAX_XX_XX_X
1._RUQ_1686
GGAAGGAGCCAGCCGGTTGGAAX_XX_XX_X
2._RUQ_1686
CC____AG____________AAX_XX_XX_X
3._SCA_11
CCTT______CCCC__TTCCAAX_XX_XX_X
4._RUQ_374
CCTT______CCCC__TTCCAAX_XX_XX_X
5._RUQ_374
CCTT____CC__________AAX_XX_XX_X
6._GC-08-157-3-56
__TTCCAGCC__CCCCTTCCAAX_XX_XX_X
7._GC-01-117-6-14
CC__CCAGCCCTCCCCTTCCAAX_XX_XX_X
8._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
9._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
10._GC-08-157-3-56
__TTCCAGCCCTCCCCTTCCAAX_XX_XX_X
11._SCA_11
__TT________CC__TTCCAAX_XX_XX_X
12._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
13._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
14._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
15._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
16._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
17._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
18._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
19._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
20._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
21._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
22._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
23._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
24._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
25._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
26._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
27._GC-01-117-6-14
CCTTCC__CCCTCCCCTTCCAAX_XX_XX_X
28._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
29._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
30._GC-08-157-3-56
CCTTCCAG__CTCCCCTTCCAAX_XX_XX_X
31._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
32._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
33._SCA_11
__TT______CTCC__TTCCAAX_XX_XX_X
34._SCA_11
CC________CTCC__TTCCAAX_XX_XX_X
35._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
36._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
37._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
38._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
39._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
40._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
41._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
42._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
43._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
44._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
45._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
46._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
47._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
48._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
49._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
50._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
51._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
52._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
53._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
54._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
55._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
56._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
57._SCA_11
CCTT______CTCC__TTCCAAX_XX_XX_X
58._RUQ_1686
GGCT______________CT__X_XX_XX_X
59._SCA_11
CGCC______TTGG__AACTAAX_XX_XX_X

Input profile: SCA_11 MITC-000057

 
 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

1._SCA_11 RUQ_1686

87.7 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._SCA_11 RUQ_1686

52.9 %
17 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

3._SCA_11

51.4 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

4._SCA_11 RUQ_374

50 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._SCA_11 RUQ_374

47.1 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._SCA_11 GC-08-157-3-56

44.9 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._SCA_11 GC-01-117-6-14

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

11._SCA_11

43.9 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

12._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

15._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

16._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

23._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

24._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

25._SCA_11 GC-08-157-3-56

43.7 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

26._SCA_11 GC-08-157-3-56

43.7 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

27._SCA_11 GC-01-117-6-14

43.6 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

28._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

31._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

32._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

33._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

34._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016

35._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

36._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

37._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

38._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

39._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

40._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

41._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

42._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

43._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

44._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

45._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

46._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

47._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

48._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

49._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

50._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

51._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

52._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

53._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

54._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

55._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

56._SCA_11

41.2 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

57._SCA_11

39.7 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

58._SCA_11 RUQ_1686

38.1 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

59._SCA_11

27.1 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998