SNP Profiles of SIC-628   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAACCAAGGGGAAAACC
1._LCT_EEN_46___
__________CCAA__AA__________
2._LCT_EEN_46___
CCCCAAAATTCCAAGGAACTAGTTCTGT
3._LCT_EEN_46___
ACACAGCCTTCCGGGGAATTGGCTCCGT
4._LCT_EEN_46___
ACACAGCCTTCCGGGGAATTGGCTCCGT
5._LCT_EEN_46___
__________CCGG__AA__________
6._LCT_EEN_46___
AAACGGACTTCTGGGGTTCTAGCTTTTT
7._LCT_EEN_46___
AAACGGACTTCTGGGGTTCTAGCT__TT
8._LCT_EEN_46___
__________CCGG__AA__________
9._LCT_EEN_46___
AAACGGACTTCTGGGGTTCTAGCTTTTT
10._LCT_EEN_46___
AAACGGACTTCTGGGGTTCTAGCTTTTT
11._LCT_EEN_46___
AAACGGACTTCTGGGGTTCTAGCTTTTT
12._LCT_EEN_46___
__________CTGG__TT__________
13._LCT_EEN_46___
__________CTGG__TT__________
14._LCT_EEN_46___
__________CTGG__TT__________
15._LCT_EEN_46___
__________CTGG__TT__________
16._LCT_EEN_46___
__________CTGG__TT__________
17._LCT_EEN_46___
__________CTGG__TT__________
18._LCT_EEN_46___
__________CTGG__TT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGAAAAGGAAAACCGGCCAAAAGG
1._LCT_EEN_46___
__TTCC__AC__TT__AACCGGAGGTCT
2._LCT_EEN_46___
TTTTCCTTACAGTTCTAACCGGAGGTCT
3._LCT_EEN_46___
CTGGCT__ACGGCTCCACTTCCGGGGTT
4._LCT_EEN_46___
CTGGCTTTACGGCTCC__TTCCGGGGTT
5._LCT_EEN_46___
__GGCT__AC__CT__ACTTCCGGGGTT
6._LCT_EEN_46___
CC__CTTT__GGCCCCACTTCGAGTTCC
7._LCT_EEN_46___
CCGTCTTT__GGCCCCACTTCGAGTTCC
8._LCT_EEN_46___
__GGCT__AC__CT____TTCCGGGGTT
9._LCT_EEN_46___
CCGTCTTT__GGCCCCACTTCGAGTTCC
10._LCT_EEN_46___
CCGTCTTT__GGCCCCACTTCGAGTTCC
11._LCT_EEN_46___
CCGTCTTT__GGCCCCACTTCGAGTTCC
12._LCT_EEN_46___
____CT______CC__ACTTCGAGTTCC
13._LCT_EEN_46___
__GTCT______CC__ACTTCGAGTTCC
14._LCT_EEN_46___
__GTCT______CC__ACTTCGAGTTCC
15._LCT_EEN_46___
__GTCT______CC__ACTTCGAGTTCC
16._LCT_EEN_46___
__GTCT______CC__ACTTCGAGTTCC
17._LCT_EEN_46___
__GTCT__CC__CC__ACTTCGAGTTCC
18._LCT_EEN_46___
__GTCT__CC__CC__ACTTCGAGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._LCT_EEN_46___
CT____ACCCAA__CCGG____TT____
2._LCT_EEN_46___
CTAAGGACCCAAGGCCGGGTAATTGGGG
3._LCT_EEN_46___
CCATAGCCCCAGGGCCGGGGATATGGGG
4._LCT_EEN_46___
CCATAGCCCCAGGGCCGGGGATATGGGG
5._LCT_EEN_46___
CC____CCCCAG__CCGG____AT____
6._LCT_EEN_46___
TTAAGGCCCCAAGGCCCCGGATAAGGAA
7._LCT_EEN_46___
TTAAGGCCCCAAGGCCCCGGATAAGGAA
8._LCT_EEN_46___
CC____CCCCAG__CCGG____AT____
9._LCT_EEN_46___
TTAAGGCCCCAAGGCCCCGGATAAGGAA
10._LCT_EEN_46___
TTAAGGCCCCAAGGCCCCGGATAAGGAA
11._LCT_EEN_46___
TTAAGGCCCCAAGGCCCCGGATAAGGAA
12._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
13._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
14._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
15._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
16._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
17._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
18._LCT_EEN_46___
TT____CCCCAA__CCCC____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCCCGGAAAACC
1._LCT_EEN_46___
AA______GG________CC__GT__CC
2._LCT_EEN_46___
AACCAGGGGGATCC____CCAGGTAACC
3._LCT_EEN_46___
ATCCAGAGAAAACG__AAAAAGGGGGGG
4._LCT_EEN_46___
ATCCAGAGAAAACG__AAAAAGGGGGGG
5._LCT_EEN_46___
AT______AA________AA__GG__GG
6._LCT_EEN_46___
ATTTAGAAAGAACG__ACAAGGGTGGCC
7._LCT_EEN_46___
ATTTAGAAAGAACG__ACAAGGGTGGCC
8._LCT_EEN_46___
AT______AA________AA__GG__GG
9._LCT_EEN_46___
ATTTAGAAAGAACG__ACAAGGGTGGCC
10._LCT_EEN_46___
ATTTAGAAAGAACG__ACAAGGGTGGCC
11._LCT_EEN_46___
ATTTAGAAAGAACG__ACAAGGGTGGCC
12._LCT_EEN_46___
AT______AG________AA__GT__CC
13._LCT_EEN_46___
AT______AG________AA__GT__CC
14._LCT_EEN_46___
AT______AG________AA__GT__CC
15._LCT_EEN_46___
AT______AG________AA__GT__CC
16._LCT_EEN_46___
AT______AG________AA__GT__CC
17._LCT_EEN_46___
AT______AG________AA__GT__CC
18._LCT_EEN_46___
AT______AG________AA__GT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAAAAGGAACCGGAAAAAAAAAACC
1._LCT_EEN_46___
AC____TT____GG______________
2._LCT_EEN_46___
ACCCTTTTAAAAGGAGTTTTGGTTACGG
3._LCT_EEN_46___
CCCCCCTTAAAGGTAGCTTTGTTTACCC
4._LCT_EEN_46___
CCCCCCTTAAAGGTAGCTTTGTTTACCC
5._LCT_EEN_46___
CC____TT____GT______________
6._LCT_EEN_46___
CCCCTTTTAAAAGGAGTTTTTTTTCCGG
7._LCT_EEN_46___
CCCCTTTTAAAAGGAGTTTTTTTTCCGG
8._LCT_EEN_46___
CC____TT____GT______________
9._LCT_EEN_46___
CCCCTTTTAAAAGGAGTTTTTTTTCCGG
10._LCT_EEN_46___
CCCCTTTTAAAAGGAGTTTTTTTTCCGG
11._LCT_EEN_46___
CCCCTTTTAAAAGGAGTTTTTTTTCCGG
12._LCT_EEN_46___
CC____TT____GG______________
13._LCT_EEN_46___
CC____TT____GG______________
14._LCT_EEN_46___
CC____TT____GG______________
15._LCT_EEN_46___
CC____TT____GG______________
16._LCT_EEN_46___
CC____TT____GG______________
17._LCT_EEN_46___
CC____TT____GG______________
18._LCT_EEN_46___
CC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._LCT_EEN_46___
__GGCC______CTGG__ATTTAGX_XX_X
2._LCT_EEN_46___
__GGCCCCAGCCCTGGCCATTTAGX_XX_X
3._LCT_EEN_46___
AACCTTCCGGCCCTGGCCATCTAAX_XX_X
4._LCT_EEN_46___
AACCTTCCGGCCCTGGCCATCTAAX_XX_X
5._LCT_EEN_46___
__CCTT______CTGG__ATCTAAX_XX_X
6._LCT_EEN_46___
AAGGCTCCGGCCCTGGCTAATTAAX_XX_X
7._LCT_EEN_46___
AAGGCTCCGGCCCTGGCTAATTAAX_XX_X
8._LCT_EEN_46___
__CCTT______CTGG__ATCTAAX_XX_X
9._LCT_EEN_46___
AAGGCTCCGGCCCTGGCTAATTAAX_XX_X
10._LCT_EEN_46___
AAGGCTCCGGCCCTGGCTAATTAAX_XX_X
11._LCT_EEN_46___
AAGGCTCCGGCCCTGGCTAATTAAX_XX_X
12._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
13._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
14._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
15._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
16._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
17._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X
18._LCT_EEN_46___
__GGCT______CTGG__AATTAAX_XX_X

Input profile: LCT_EEN_46 MITC-000412

 
USDA-SHRS, United States of America
 Mars, 2018

1._LCT_EEN_46

37.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 6
 Dapeng Zhang, 2016

2._LCT_EEN_46 GC-03-033-3-12

36.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._LCT_EEN_46 GC-03-033-3-12

26.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._LCT_EEN_46 GC-03-033-3-12

26.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

5._LCT_EEN_46

22.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 5 > FP
 Dapeng Zhang, 2016

6._LCT_EEN_46 GC-03-033-3-12

22.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._LCT_EEN_46 GC-03-033-3-12

22.2 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._LCT_EEN_46

22.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_46 GC-03-033-3-12

21.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._LCT_EEN_46 GC-03-033-3-12

21.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._LCT_EEN_46 GC-03-033-3-12

21.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._LCT_EEN_46

19.7 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 2
 Dapeng Zhang, 2016

13._LCT_EEN_46

19.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 7
 Dapeng Zhang, 2016

14._LCT_EEN_46

19.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 9
 Dapeng Zhang, 2016

15._LCT_EEN_46

19.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 10
 Dapeng Zhang, 2016

16._LCT_EEN_46

19.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3312 1 > FP
 Dapeng Zhang, 2016

17._LCT_EEN_46

18.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 478
 Dapeng Zhang, 2016

18._LCT_EEN_46

18.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 17 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998