SNP Profiles of AMAZ 11   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCGGCCAAGGGGCCAAGGGGAGAAAA
1._RUQ_1600
____________GG______________
2._RUQ_1600
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAAGGAAGGAAAAGGGGCCAAGG
1._RUQ_1600
______________AA__CC________
2._RUQ_1600
____CC______CCAATTCCGGGGTT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AAAACCGGGGGGGGCGCCAAAAAAAGTT
1._RUQ_1600
________GG____________AA____
2._RUQ_1600
__AACCCCGG__CC________AAAGTT
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGGGAAAAAACGGGACAAGGCCGGGGCC
1._RUQ_1600
________________AA______GGCC
2._RUQ_1600
__________CC____AA__GG__GGCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAAAAAAAAAAAGAAAAAACCGGAA
1._RUQ_1600
__CC______TTAA________CCCC__
2._RUQ_1600
__CCTT____TTAACT____TTCC____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
GGAACGGGCCAACCGGAAAAAAX_XX_XX_X
1._RUQ_1600
CC____GG____________AAX_XX_XX_X
2._RUQ_1600
CCTT____CC__________AAX_XX_XX_X

Input profile: AMAZ_11 RUQ_1600

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._AMAZ_11 RUQ_1600

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._AMAZ_11 RUQ_1600

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1270 17TcSNP1309 18TcSNP1350 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998