SNP Profiles of CCN 51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAGAAAAAGAGACAAGGAGAAAACC
1._GC-07-19-1-21
CCACAGAAAAAGAGACAAGGAGAAAACC
2._MITC-000000
CCACAGAAAAAGAGACAAGGAGAAAACC
3._RUQ_1737B
____________AG______________
4._RUQ_1736
____________AG______________
5._RUQ_1737
____________AG______________
6._RUQ_1737C
____________AG______________
7._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTT__GG
8._CCN_51
__________CTAG__AA__________
9._CCN_51
__________CTAG__AA__________
10._CCN_51
__________CTAG__AA__________
11._CCN_51
__________CTAG__AA__________
12._CCN_51
__________CTAG__AA__________
13._CCN_51
__________CTAG__AA__________
14._CCN_51
__________CTAG__AA__________
15._CCN_51
__________CTAG__AA__________
16._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTTTTGG
17._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTTTTGG
18._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTTTTGG
19._CCN_51
__________CT____AA__________
20._CCN_51
__________CTAG__AA__________
21._GC-07-019-1-21
CCACAGAATTCT__GTAACCAG__TT__
22._GC-06-4-1-04
CCACAGAATTCTAGGTAACCAGTTTTGG
23._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTTTTGG
24._GC-07-019-1-21
CCACAGAATTCTAGGTAACCAGTTTTGG
25._CCN_51
__________TTAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAAGAAACGGAAAGACAACCAGAAGG
1._GC-07-19-1-21
AGAAAGAAACGGAAAGACAACCAGAAGG
2._MITC-000000
AGAAAGAAACGGAAAGACAACCAGAAGG
3._RUQ_1737B
__TT____________AC__GG______
4._RUQ_1736
__TT____________AC__GG______
5._RUQ_1737
__TT____________AC__GG______
6._RUQ_1737C
__TT____________AC__GG______
7._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
8._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
9._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
10._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
11._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
12._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
13._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
14._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
15._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
16._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
17._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
18._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
19._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
20._CCN_51
__TTCT__AC__TT__ACTTGGAGTTCC
21._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
22._GC-06-4-1-04
CTTTCTTTACGGTTCTACTTGGAGTTCC
23._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
24._GC-07-019-1-21
CTTTCTTTACGGTTCTACTTGGAGTTCC
25._CCN_51
__GGCC__AA__TT__AATTCCGGGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGAACGAAGGAGGGCCTTTTAGAG
1._GC-07-19-1-21
AGATAGAACGAAGGAGGGCCTTTTAGAG
2._MITC-000000
AGATAGAACGAAGGAGGGCCTTTTAGAG
3._RUQ_1737B
__________AA____________AG__
4._RUQ_1736
__________AA____________AG__
5._RUQ_1737
__________AA____________AG__
6._RUQ_1737C
__________AA____________AG__
7._GC-07-019-1-21
CTATAGAACGAAGGCTGGGGAATTAGAG
8._CCN_51
CT____AACGAA__CTGG____TT____
9._CCN_51
CT____AACGAA__CTGG____TT____
10._CCN_51
CT____AACGAA__CTGG____TT____
11._CCN_51
CT____AACGAA__CTGG____TT____
12._CCN_51
CT____AACGAA__CTGG____TT____
13._CCN_51
CT____AACGAA__CTGG____TT____
14._CCN_51
CT____AACGAA__CTGG____TT____
15._CCN_51
CT____AACGAA__CTGG____TT____
16._GC-07-019-1-21
CTATAGAACGAAGGCTGGGGAATTAGAG
17._GC-07-019-1-21
CTATAGAACGAAGGCTGGGGAATTAGAG
18._GC-07-019-1-21
CTATAGAACGAAGGCTGGGGAATTAGAG
19._CCN_51
CT____AACGAA__CTGG____TT____
20._CCN_51
CT____AACGAA__CTGG____TT____
21._GC-07-019-1-21
CT__AGAACGAA__CTGGGGAATTAGAG
22._GC-06-4-1-04
CT__AGAA__AA__CTGGGGAATTAGAG
23._GC-07-019-1-21
CT__AGAACGAA__CTGGGGAATTAGAG
24._GC-07-019-1-21
CT__AGAACGAA__CTGGGGAATTAGAG
25._CCN_51
CC____CCGGGG__TTGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGAGGGGGAAGGAGACACAGAAAGCC
1._GC-07-19-1-21
AAAGAGGGGGAAGGAGACACAGAAAGCC
2._MITC-000000
AAAGAGGGGGAAGGAGACACAGAAAGCC
3._RUQ_1737B
__________________________CC
4._RUQ_1736
__________________AA______CC
5._RUQ_1737
__________________AA______CC
6._RUQ_1737C
__________________AA______CC
7._GC-07-019-1-21
AACTAGGGGGAACC__ACACAGTTAGCC
8._CCN_51
AA______GG________AC__TT__CC
9._CCN_51
AA______GG________AC__TT__CC
10._CCN_51
AA______GG________AC__TT__CC
11._CCN_51
AA______GG________AC__TT__CC
12._CCN_51
AA______GG________AC__TT__CC
13._CCN_51
AA______GG________AC__TT__CC
14._CCN_51
AA______GG________AC__TT__CC
15._CCN_51
AA______GG________AC__TT__CC
16._GC-07-019-1-21
AACTAGGGGGAACC__ACACAGTTAGCC
17._GC-07-019-1-21
AACTAGGGGGAACC__ACACAGTTAGCC
18._GC-07-019-1-21
AACTAGGGGGAACC__ACACAGTTAGCC
19._CCN_51
AA______GG________AC__TT__CC
20._CCN_51
AA______GG________AC__TT__CC
21._GC-07-019-1-21
AACT__GGGGAACCCTACACAGTTAGCC
22._GC-06-4-1-04
AACTAGGGGGAACCCTACACAGTTAGCC
23._GC-07-019-1-21
AACTAGGGGG__CCCTACACAGTTAGCC
24._GC-07-019-1-21
AACTAGGGGG__CCCTACACAGTTAGCC
25._CCN_51
TT______GG________CC__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCAGGGAGAGAACCGGAAACACACCCCG
1._GC-07-19-1-21
CCAGGGAGAGAACCGGAAACACACCCCG
2._MITC-000000
CCAGGGAGAGAACCGGAAACACACCCCG
3._RUQ_1737B
CC__CC______GGGG________CCTT
4._RUQ_1736
CC__CC______GGGG________CCTT
5._RUQ_1737
CC__CC______GGGG________CCTT
6._RUQ_1737C
CC__CC______GGGG________CCTT
7._GC-07-019-1-21
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
8._CCN_51
CC____CT____GG______________
9._CCN_51
CC____CT____GG______________
10._CCN_51
CC____CT____GG______________
11._CCN_51
CC____CT____GG______________
12._CCN_51
CC____CT____GG______________
13._CCN_51
CC____CT____GG______________
14._CCN_51
CC____CT____GG______________
15._CCN_51
CC____CT____GG______________
16._GC-07-019-1-21
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
17._GC-07-019-1-21
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
18._GC-07-019-1-21
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
19._CCN_51
______CT____GG______________
20._CCN_51
CC____CT____GG______________
21._GC-07-019-1-21
__CTCCCTAAAGGGGGTTGTGTGTCCCG
22._GC-06-4-1-04
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
23._GC-07-019-1-21
CCCTCCCTAAAGGGGGTTGTGTGTCCCG
24._GC-07-019-1-21
CCCTCCCTAAAGGGGG__GTGTGTCCCG
25._CCN_51
CC____CC____TT______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGGGGGGGAGACAGGGAGAAAAAAX_XX_X
1._GC-07-19-1-21
AGGGGGGGAGACAGGGAGAAAAAAX_XX_X
2._MITC-000000
AGGGGGGGAGACAGGGAGAAAAAAX_XX_X
3._RUQ_1737B
__CC____AG____________AAX_XX_X
4._RUQ_1736
__CC____AG____________AAX_XX_X
5._RUQ_1737
__CC____AG____________AAX_XX_X
6._RUQ_1737C
__CC____AG____________AAX_XX_X
7._GC-07-019-1-21
AACCCCCCAGACCTGGCTAATTAAX_XX_X
8._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
9._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
10._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
11._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
12._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
13._CCN_51
__CCCC______CTGG__AATTAAX_XX_X
14._CCN_51
__CCCC______CTGG__AACTAAX_XX_X
15._CCN_51
__CCCC______CTGG__AACTAAX_XX_X
16._GC-07-019-1-21
AACCCCCCAGACCTGGCTAATTAAX_XX_X
17._GC-07-019-1-21
AACCCCCCAGACCTGGCTAATTAAX_XX_X
18._GC-07-019-1-21
AACCCCCCAGACCTGGCTAATTAAX_XX_X
19._CCN_51
____CC______CTGG__AATTAAX_XX_X
20._CCN_51
__CCCC______CT____AATTAAX_XX_X
21._GC-07-019-1-21
AA__CCCCAGACCTGGCTAATTAAX_XX_X
22._GC-06-4-1-04
AACCCCCCAGACCTGGCTAATTAAX_XX_X
23._GC-07-019-1-21
AACCCCCCAGACCTGGCTAATTAAX_XX_X
24._GC-07-019-1-21
AACCCCCCAGACCT__CTAATTAAX_XX_X
25._CCN_51
__CCCC______TTGG__AACCAAX_XX_X

Input profile: CCN_51 RUQ_1736

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._CCN_51 GC-07-19-1-21

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._CCN_51 MITC-000000

identical
82 shared markers

 Offtype  View  View all
USDA-SHRS, United States of America
 Mars, 2018

3._CCN_51 RUQ_1737B

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._CCN_51 RUQ_1736

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Cri
0.293 IMC
0.424

5._CCN_51 RUQ_1737

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

6._CCN_51 RUQ_1737C

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._CCN_51 GC-07-019-1-21

51.9 %
80 shared markers

 Reference  View  View all  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

8._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

9._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

10._CCN_51

51.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

11._CCN_51

51.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

12._CCN_51

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

13._CCN_51

51.4 %
35 shared markers

 Verified  View  View all  Any
Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

14._CCN_51

51.4 %
35 shared markers

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USAPEN
 Dapeng Zhang, 2016

15._CCN_51

51.4 %
35 shared markers

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USASPC
 Dapeng Zhang, 2016

16._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

 Verified  View  View all  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._CCN_51

50 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

20._CCN_51

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

21._CCN_51 GC-07-019-1-21

49.3 %
74 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

22._CCN_51 GC-06-4-1-04

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

23._CCN_51 GC-07-019-1-21

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

24._CCN_51 GC-07-019-1-21

48.7 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

25._CCN_51

34.3 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998