SNP Profiles of GU 195 /V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._CRU_156___
__________CCGG__AA__________
2._CRU_156___
__________CC__GG____GG______
3._CRU_156___
__________CTGG__AA__________
4._CRU_156___
__________CTAG__AA__________
5._CRU_156___
__________CTAG__AA__________
6._CRU_156___
__________CTAG__AA__________
7._CRU_156___
__________CTAG__AA__________
8._CRU_156___
__________CTAG__AA__________
9._CRU_156___
CCCCAACCCTCTAGGTAACCAGTTTTGG
10._CRU_156___
CCCCAACCCTCTAGGTAACCAGTTTTGG
11._CRU_156___
CCCCAACCCTCTAGGTAACCAGTTTTGG
12._CRU_156___
CCCCAACCCTCTAGGTAACCAGTTTTGG
13._CRU_156___
CCCCAACCCTCTAGGTAACCAGTTTTGG
14._CRU_156___
____________AA______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCCGGAAAA
1._CRU_156___
__TTTT__CC__TT__AACCGGGGGTTT
2._CRU_156___
__TT__TT______CCAACCGGGGTTTT
3._CRU_156___
__GTCT__AA__CT__ACCTCGGGGTCT
4._CRU_156___
__GTCC__AA__TT__AACTCGAAGTCT
5._CRU_156___
__GTCC__AA__TT__AACTCGAAGTCT
6._CRU_156___
__GTCC__AA__TT__AACTCGAAGTCT
7._CRU_156___
__GTCC__AA__TT__AACTCGAAGTCT
8._CRU_156___
__GTCC__AA__TT__AACTCGAAGTCT
9._CRU_156___
CCGTCCTTAAGGTTCCAACTCGAAGTCT
10._CRU_156___
CCGTCCTTAAGGTTCCAACTCGAAGTCT
11._CRU_156___
CCGTCCTTAAGGTTCCAACTCGAAGTCT
12._CRU_156___
CCGTCCTTAAGGTTCCAACTCGAAGTCT
13._CRU_156___
CCGTCCTTAAGGTTCCAACTCGAAGTCT
14._CRU_156___
__GT____________CC__CG______
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._CRU_156___
CC____AACCGG__CCGG____TT____
2._CRU_156___
____GGAACCGG__CC________GGGG
3._CRU_156___
CC____CCGGAA__CTGG____TT____
4._CRU_156___
CC____ACGGAG__CTGG____AT____
5._CRU_156___
CC____ACGGAG__CTGG____AT____
6._CRU_156___
CC____ACGGAG__CTGG____AT____
7._CRU_156___
CC____ACGGAG__CTGG____AT____
8._CRU_156___
CC____ACGGAG__CTGG____AT____
9._CRU_156___
CCTTGGACGGAGGGCTGGGGAAATAGAG
10._CRU_156___
CCTTGGACGGAGGGCTGGGGAAATAGAG
11._CRU_156___
CCTTGGACGGAGGGCTGGGGAAATAGAG
12._CRU_156___
CCTTGGACGGAGGGCTGGGGAAATAGAG
13._CRU_156___
CCTTGGACGGAGGGCTGGGGAAATAGAG
14._CRU_156___
__________AG____________AG__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCAGCC
1._CRU_156___
AA______GG________AA__GG__CC
2._CRU_156___
AA__________CC____AA__GG__CC
3._CRU_156___
AA______GG________AC__GG__GG
4._CRU_156___
AT______GG________CC__GT__CC
5._CRU_156___
AT______GG________CC__GT__CC
6._CRU_156___
AT______GG________CC__GT__CC
7._CRU_156___
AT______GG________CC__GT__CC
8._CRU_156___
AT______GG________CC__GT__CC
9._CRU_156___
ATCTAGGGGGAACG__CCCCGGGTGGCC
10._CRU_156___
ATCTAGGGGGAACG__CCCCGGGTGGCC
11._CRU_156___
ATCTAGGGGGAACG__CCCCGGGTGGCC
12._CRU_156___
ATCTAGGGGGAACG__CCCCGGGTGGCC
13._CRU_156___
ATCTAGGGGGAACG__CCCCGGGTGGCC
14._CRU_156___
__________________CC______CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGGGAAAACCAAAACCAAAAAACC
1._CRU_156___
CC____CC____GG______________
2._CRU_156___
CC__CCCC____GGAATT____TTAA__
3._CRU_156___
AC__________GG______________
4._CRU_156___
AC____CT____GG______________
5._CRU_156___
AC____CT____GG______________
6._CRU_156___
AC____CT____GG______________
7._CRU_156___
AC____CT____GG______________
8._CRU_156___
AC____CT____GG______________
9._CRU_156___
ACCCCCCTAGAGGGGGCTTTGTGTACGG
10._CRU_156___
ACCCCCCTAGAGGGGGCTTTGTGTACGG
11._CRU_156___
ACCCCCCTAGAGGGGGCTTTGTGTACGG
12._CRU_156___
ACCCCCCTAGAGGGGGCTTTGTGTACGG
13._CRU_156___
ACCCCCCTAGAGGGGGCTTTGTGTACGG
14._CRU_156___
CC__CC______GTGG________CCTT
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
1._CRU_156___
__GGCC______CCGG__AACCAGX_XX_X
2._CRU_156___
__GGCC____CC__________AAX_XX_X
3._CRU_156___
__CCCT______CTGG__AACTAAX_XX_X
4._CRU_156___
__CCCC______TTGG__AACTAAX_XX_X
5._CRU_156___
__CCCC______TTGG__AACTAAX_XX_X
6._CRU_156___
__CCCC______TTGG__AACTAAX_XX_X
7._CRU_156___
__CCCC______TTGG__AACTAAX_XX_X
8._CRU_156___
__CCCC______TTGG__AACTAAX_XX_X
9._CRU_156___
__CCCCCCGGCCTTGGCTAACTAAX_XX_X
10._CRU_156___
__CCCCCCGGCCTTGGCTAACTAAX_XX_X
11._CRU_156___
__CCCCCCGGCCTTGGCTAACTAAX_XX_X
12._CRU_156___
__CCCCCCGGCCTTGGCTAACTAAX_XX_X
13._CRU_156___
__CCCCCCGGCCTTGGCTAACTAAX_XX_X
14._CRU_156___
__GG____AG____________AGX_XX_X

Input profile: CRU_156 RUQ_880

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._CRU_156 RUQ_880

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._CRU_156 RUQ_880

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CRU_156

41.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

4._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

5._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

6._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

7._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

8._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016

9._CRU_156 GC-01-131-7-08

37.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._CRU_156 GC-01-131-7-08

37.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._CRU_156 GC-01-131-7-08

37.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._CRU_156 GC-01-131-7-08

37.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._CRU_156 GC-01-131-7-08

37.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CRU_156 RUQ_880

26.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998