SNP Profiles of EET 399 [ECU] View Data

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_Input profile	AC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	AA	AC
1._RUQ_745B	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
3._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
4._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
5._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
6._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
7._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
8._GC-04-047-3-11	AC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	TT	GT
9._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
10._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
11._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
12._RUQ_745	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
13._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
14._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
15._EET_399_[ECU]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
16._RUQ_745	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
17._EET_399_[ECU]	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
18._RUQ_745	__	__	__	__	__	__	AA	__	__	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AG	AC	GG	AG	GG	AC	AA	GG	AG	AC	AG	GG
1._RUQ_745B	__	__	__	__	__	__	__	AC	__	CC	__	__	__	__
2._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	__	CC
3._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	__	CC
4._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	CT	CC
5._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	CT	CC
6._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	CT	CC
7._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	CT	CC
8._GC-04-047-3-11	TT	TT	TT	AA	GG	CT	CC	AC	TT	CC	AG	GT	CT	CC
9._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	__	CC
10._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	CT	CC
11._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	__	CC
12._RUQ_745	__	TT	__	AC	__	CT	__	AC	TT	CC	AG	GT	CT	CC
13._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	CT	CC
14._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	CT	CC
15._EET_399_[ECU]	__	TT	__	AA	__	CT	__	AC	TT	CC	AG	GT	CT	CC
16._RUQ_745	__	__	CT	__	__	__	CC	AC	TT	CC	AG	GT	CT	__
17._EET_399_[ECU]	__	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT	CT
18._RUQ_745	__	__	__	__	__	__	__	AC	__	GG	__	__	__	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	AG	CC	CC	GG	GG	GG	GG	CC	AT	AT	AG	GG	AA
1._RUQ_745B	__	__	__	__	GG	__	__	__	__	__	__	AG	__	__
2._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
3._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
4._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
5._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
6._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
7._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
8._GC-04-047-3-11	TT	AG	CC	GG	GG	GG	CC	GG	GG	AT	AT	AG	GG	AA
9._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
10._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
11._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
12._RUQ_745	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
13._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
14._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
15._EET_399_[ECU]	__	__	CC	GG	GG	__	CC	GG	__	__	AT	__	__	AA
16._RUQ_745	__	__	CC	GG	GG	__	CC	__	__	__	__	AG	GG	AA
17._EET_399_[ECU]	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
18._RUQ_745	__	__	__	__	AA	__	__	__	__	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	GG	AG	GG	AA	CG	AG	AC	AC	GG	CC	GG	GG	AC
1._RUQ_745B	__	__	__	__	__	__	__	__	AC	__	__	__	GG	AC
2._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	GG	GG	GG	AC
3._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	GG	GG	GG	AC
4._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	__	GG	GG	AC
5._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	GG	GG	GG	AC
6._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	GG	GG	GG	AC
7._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	AC	GG	GG	GG	GG	AC
8._GC-04-047-3-11	CC	GG	AG	GG	AA	CG	__	AC	__	GG	GG	GG	GG	AC
9._EET_399_[ECU]	__	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC
10._EET_399_[ECU]	__	__	__	GG	__	__	__	__	AC	__	__	__	GG	AC
11._EET_399_[ECU]	__	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC
12._RUQ_745	__	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC
13._EET_399_[ECU]	__	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC
14._EET_399_[ECU]	__	__	__	GG	__	__	__	__	AC	__	GG	__	GG	AC
15._EET_399_[ECU]	__	__	__	GG	__	__	__	__	__	__	GG	__	GG	AC
16._RUQ_745	__	__	__	__	__	CC	__	__	AC	__	GG	__	GG	AC
17._EET_399_[ECU]	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
18._RUQ_745	__	__	__	__	__	__	__	__	CC	__	__	__	CC	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AG	AA	AA	AC	AG	AG	AC	AC	AA	AC	CG	GG
1._RUQ_745B	__	CC	__	__	__	GT	AG	__	__	__	__	AC	CT	__
2._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
3._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
4._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
5._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
6._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
7._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
8._GC-04-047-3-11	CC	CC	CT	AA	AA	GT	AG	CT	GT	GT	TT	AC	CG	__
9._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
10._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
11._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
12._RUQ_745	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
13._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
14._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
15._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
16._RUQ_745	__	CC	CT	__	__	GT	AG	CT	__	__	TT	AC	__	__
17._EET_399_[ECU]	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
18._RUQ_745	__	CT	__	__	__	GG	AG	__	__	__	__	AA	TT	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CG	AG	GG	GG	CC	AG	CG	GG	AA	AA	AA	X_X	X_X	X_X
1._RUQ_745B	CG	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X	X_X
2._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
3._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
4._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
5._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
6._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
7._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
8._GC-04-047-3-11	CG	CT	CC	GG	CC	CT	CG	CC	AA	TT	AA	X_X	X_X	X_X
9._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
10._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
11._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
12._RUQ_745	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
13._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
14._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
15._EET_399_[ECU]	CG	CT	__	__	__	CT	CG	__	AA	TT	AA	X_X	X_X	X_X
16._RUQ_745	CG	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X	X_X
17._EET_399_[ECU]	CG	CC	__	__	__	TT	GG	__	AA	CT	AG	X_X	X_X	X_X
18._RUQ_745	GG	__	__	AA	__	__	__	__	__	__	GG	X_X	X_X	X_X

Input profile: EET_399_[ECU] RUQ_745

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._EET_399_[ECU] RUQ_745B

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

LCT
0.553 Nan
0.411

2._EET_399_[ECU] GC-04-047-3-11

54.5 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

3._EET_399_[ECU] GC-04-047-3-11

54.5 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

4._EET_399_[ECU] GC-04-047-3-11

54.5 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

5._EET_399_[ECU] GC-04-047-3-11

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

6._EET_399_[ECU] GC-04-047-3-11

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

7._EET_399_[ECU] GC-04-047-3-11

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._EET_399_[ECU] GC-04-047-3-11

53.2 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._EET_399_[ECU]

53 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

10._EET_399_[ECU]

53 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

11._EET_399_[ECU]

53 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

12._EET_399_[ECU] RUQ_745

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._EET_399_[ECU]

51.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

14._EET_399_[ECU]

51.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

15._EET_399_[ECU]

50 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

16._EET_399_[ECU] RUQ_745

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._EET_399_[ECU]

39.7 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

18._EET_399_[ECU] RUQ_745

34.4 %
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.575 Cri
0.421

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1270	17	TcSNP1309	18	TcSNP1350	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998