SNP Profiles of GU 136 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAACCAAGGGGCCAAGGGGAAGGAA
1._GU_125_/C___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GU_125_/C___
____________GG______________
3._GU_125_/C___
__________CCGG__AA__________
4._GU_125_/C___
__________CCGG__AA__________
5._GU_125_/C___
__________CC__GG____GG______
6._GU_125_/C___
__________CCGG__AA__________
7._GU_125_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
8._GU_125_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
9._GU_125_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
10._GU_125_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
11._GU_125_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
12._GU_125_/C___
__________CCGG__AA__________
13._GU_125_/C___
__________CCGG__AA__________
14._GU_125_/C___
__________CCGG__AA__________
15._GU_125_/C___
__________CCGG__AA__________
16._GU_125_/C___
__________CCGG__AA__________
17._GU_125_/C___
CCAAAGCCTTCCGGGG__CCGGTTCCTT
18._GU_125_/C___
__________CCGG______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCGGGAAAA
1._GU_125_/C___
AAAAAAAA__GGAAGGAAGGGGGGAAAA
2._GU_125_/C___
__TT____________AA__CG______
3._GU_125_/C___
__TTTT__CC__TT__AACCCGGGGTTT
4._GU_125_/C___
__TTTT__CC__TT__AACCCGGGTTTT
5._GU_125_/C___
__TT__TT______CCAACCCGGGTTTT
6._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
7._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
8._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
9._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
10._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
11._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
12._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
13._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
14._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
15._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
16._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
17._GU_125_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
18._GU_125_/C___
__TTTT______TT__AACCCCGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GU_125_/C___
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
2._GU_125_/C___
__________GG____________GG__
3._GU_125_/C___
CC____AACCGG__CCGG____AT____
4._GU_125_/C___
CC____AACCGG__CCGG____AT____
5._GU_125_/C___
____GGAACCGG__CC________GGGG
6._GU_125_/C___
CC____AACCGG__CCGG____AA____
7._GU_125_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
8._GU_125_/C___
CCAAGGAACCGGGGCCGGGG__AAGGGG
9._GU_125_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
10._GU_125_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
11._GU_125_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
12._GU_125_/C___
CC____AACCGG__CCGG____AA____
13._GU_125_/C___
CC____AACCGG__CCGG____AA____
14._GU_125_/C___
CC____AACCGG__CCGG____AA____
15._GU_125_/C___
CC____AACCGG__CCGG____AA____
16._GU_125_/C___
CC____AACCGG__CCGG____AA____
17._GU_125_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
18._GU_125_/C___
CC____AACCGG__CCGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGTTGGAACCAAGGCCGGCC
1._GU_125_/C___
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GU_125_/C___
__________________AA______CC
3._GU_125_/C___
AA______GG________AA__GG__CC
4._GU_125_/C___
AA______GG________AA__GG__CC
5._GU_125_/C___
AA__________CC____AA__GG__CC
6._GU_125_/C___
AA______GG________AA______CC
7._GU_125_/C___
AATTGGGGGGTTCC__CCAAGG__GGCC
8._GU_125_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
9._GU_125_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
10._GU_125_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
11._GU_125_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
12._GU_125_/C___
AA______GG________AA__GG__CC
13._GU_125_/C___
AA______GG________AA__GG__CC
14._GU_125_/C___
AA______GG________AA__GG__CC
15._GU_125_/C___
AA______GG________AA__GG__CC
16._GU_125_/C___
AA______GG________AA__GG__CC
17._GU_125_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
18._GU_125_/C___
AA______GG________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGGGAACCAAAACCAAAAAACC
1._GU_125_/C___
CCGGGGGGAAAACCAAAACCAAAAAACC
2._GU_125_/C___
AC__CC______GGAA________AACT
3._GU_125_/C___
AC____CC____GG______________
4._GU_125_/C___
AC____CC____GG______________
5._GU_125_/C___
AC__CCCC____GGAATT____TTAA__
6._GU_125_/C___
CC____CC____GG______________
7._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
8._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
9._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
10._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
11._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
12._GU_125_/C___
CC____CC____GG______________
13._GU_125_/C___
CC____CC____GG______________
14._GU_125_/C___
CC____CC____GG______________
15._GU_125_/C___
CC____CC____GG______________
16._GU_125_/C___
CC____CC____GG______________
17._GU_125_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
18._GU_125_/C___
CC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
1._GU_125_/C___
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._GU_125_/C___
__GG____GG____________AGX_XX_X
3._GU_125_/C___
__GGCC______CCGG__AACCAGX_XX_X
4._GU_125_/C___
__GGCC______CCGG__AACCAGX_XX_X
5._GU_125_/C___
__GGCC____CC__________AGX_XX_X
6._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
7._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
8._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
9._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
10._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
11._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
12._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
13._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
14._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
15._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
16._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X
17._GU_125_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
18._GU_125_/C___
__GGCC______CCGG__AACCGGX_XX_X

Input profile: GU_125_/C RUQ_188

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_125_/C GC-01-138-7-17

94.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_125_/C RUQ_188

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_125_/C RUQ_188

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_125_/C RUQ_188

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._GU_125_/C RUQ_188

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._GU_125_/C

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

7._GU_125_/C GC-01-138-7-17

44.9 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

44.9 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

10._GU_125_/C GC-01-138-7-17

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._GU_125_/C GC-01-138-7-17

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._GU_125_/C

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

13._GU_125_/C

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

14._GU_125_/C

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016

15._GU_125_/C

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

16._GU_125_/C

44.1 %
34 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

17._GU_125_/C GC-01-138-7-17

43.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._GU_125_/C

42.4 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998