SNP Profiles of GU 147 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._GC-01-80-4-16
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_222
____________GG______________
3._RUQ_222
__________CCGG__AA__________
4._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
9._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
10._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
11._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
13._GU_147_/H
__________CCGG__AA__________
14._GU_147_/H
__________CCGG__AA__________
15._GU_147_/H
__________CCGG__AA__________
16._GU_147_/H
__________CCGG__AA__________
17._GU_147_/H
__________CCGG__AA__________
18._GU_147_/H
__________CCGG__AA__________
19._GU_147_/H
__________CCGG__AA__________
20._GU_147_/H
__________CCGG__AA__________
21._GU_147_/H
__________CCGG__AA__________
22._RUQ_222
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCCAGAAAA
1._GC-01-80-4-16
AAAAAAAA__GGAAGGAAGGGGGGAAAA
2._RUQ_222
__TT____________AA__CC______
3._RUQ_222
__TTTT__CC__TT__AACCCCGGTTTT
4._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
5._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
6._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
7._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
8._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
9._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
10._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
11._GC-01-080-4-16
TTTTTTTT__GGTTCCAACCCCGGTTTT
12._GC-01-080-4-16
TTTTTTTT__GGTTCC__CCCCGGTTTT
13._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
14._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
15._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
16._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
17._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
18._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
19._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
20._GU_147_/H
__TTTT______TT__AACCCCGGTTTT
21._GU_147_/H
__TTTT______TT____CCCCGGTTTT
22._RUQ_222
__TT__TT______CCAACCCCGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GC-01-80-4-16
GGTTGGAAGGGGGGGGGG__TTATGGGG
2._RUQ_222
__________GG____________GG__
3._RUQ_222
CC____AACCGG__CCGG____AT____
4._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
5._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
6._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
7._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
8._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
9._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
10._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
11._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
12._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
13._GU_147_/H
CC____AACCGG__CCGG____AT____
14._GU_147_/H
CC____AACCGG__CCGG____AT____
15._GU_147_/H
CC____AACCGG__CCGG____AT____
16._GU_147_/H
CC____AACCGG__CCGG____AT____
17._GU_147_/H
CC____AACCGG__CCGG____AT____
18._GU_147_/H
CC____AACCGG__CCGG____AT____
19._GU_147_/H
CC____AACCGG__CCGG____AT____
20._GU_147_/H
CC____AACCGG__CCGG____AT____
21._GU_147_/H
CC____AACCGG__CCGG____AT____
22._RUQ_222
____GGAACCGG__CC________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-80-4-16
AAAGGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_222
__________________AA______CC
3._RUQ_222
AA______GG________AA__GG__CC
4._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
5._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
6._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
7._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
8._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
9._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
10._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
11._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
12._GC-01-080-4-16
AACTGGGGGGTTCC__CCAAGGGGGGCC
13._GU_147_/H
AA______GG________AA__GG__CC
14._GU_147_/H
AA______GG________AA__GG__CC
15._GU_147_/H
AA______GG________AA__GG__CC
16._GU_147_/H
AA______GG________AA__GG__CC
17._GU_147_/H
AA______GG________AA__GG__CC
18._GU_147_/H
AA______GG________AA__GG__CC
19._GU_147_/H
AA______GG________AA__GG__CC
20._GU_147_/H
AA______GG________AA__GG__CC
21._GU_147_/H
AA______GG________AA__GG__CC
22._RUQ_222
AA__________CC____AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGGGAGAACCAAAAACAAAAAACC
1._GC-01-80-4-16
AAGGGGAGGGAACCAAAACCAAAAAACC
2._RUQ_222
AA__CC______GGAA________AACT
3._RUQ_222
AA____CT____GG______________
4._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
5._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
6._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
7._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
8._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
9._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
10._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
11._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
12._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
13._GU_147_/H
AA____CT____GG______________
14._GU_147_/H
AA____CT____GG______________
15._GU_147_/H
AA____CT____GG______________
16._GU_147_/H
AA____CT____GG______________
17._GU_147_/H
AA____CT____GG______________
18._GU_147_/H
AA____CT____GG______________
19._GU_147_/H
AA____CT____GG______________
20._GU_147_/H
AA____CT____GG______________
21._GU_147_/H
AA____CT____GG______________
22._RUQ_222
AA__CCCT____GGAATT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
1._GC-01-80-4-16
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._RUQ_222
__GG____GG____________GGX_XX_X
3._RUQ_222
__GGCC______CCGG__AACCGGX_XX_X
4._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
5._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
6._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
7._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
8._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
9._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
10._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
11._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
12._GC-01-080-4-16
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
13._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
14._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
15._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
16._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
17._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
18._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
19._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
20._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
21._GU_147_/H
__GGCC______CCGG__AACCGGX_XX_X
22._RUQ_222
__GGCC____CC__________GGX_XX_X

Input profile: GU_147_/H RUQ_222

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_147_/H GC-01-80-4-16

91.9 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_147_/H RUQ_222

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_147_/H RUQ_222

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

11._GU_147_/H GC-01-080-4-16

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

44.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

14._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016

15._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

16._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

17._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

18._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

19._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

20._GU_147_/H

44.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

21._GU_147_/H

42.4 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

22._GU_147_/H RUQ_222

41.7 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998