SNP Profiles of GU 241 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_1431
____________GG______________
3._GU_241_/P
__________CCGG__AA__________
4._GU_241_/P
__________CCGG__AA__________
5._RUQ_1431
__________CCGG__AA__________
6._GU_241_/P
__________CCGG__AA__________
7._GU_241_/P
__________CCGG__AA__________
8._GU_241_/P
__________CCGG__AA__________
9._GU_241_/P
__________CCGG__AA__________
10._RUQ_1431
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCGAGAAAA
1._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
2._RUQ_1431
__TT____________AA__CG______
3._GU_241_/P
__TTTT______TT__AACCCGAGTTTT
4._GU_241_/P
__TTTT__CC__TT__AACCCGAGTTTT
5._RUQ_1431
__TTTT__CC__TT__AACCCGAGGTTT
6._GU_241_/P
__TTTT______TT__AACCCGAGTTTT
7._GU_241_/P
__TTTT______TT__AACCCGAGTTTT
8._GU_241_/P
__TTTT______TT__AACCCGAGTTTT
9._GU_241_/P
__TTTT______TT__AACCCGAGTTTT
10._RUQ_1431
__TT__TT______CCAACCCGAGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATAGGG
1._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
2._RUQ_1431
__________GG____________AG__
3._GU_241_/P
______AACCGG__CCGG____AT____
4._GU_241_/P
CC____AA__GG__CCGG____AT____
5._RUQ_1431
CC____AACCGG__CCGG____AT____
6._GU_241_/P
CC____AACCGG__CCGG____AT____
7._GU_241_/P
CC____AACCGG__CCGG____AT____
8._GU_241_/P
CC____AACCGG__CCGG____AT____
9._GU_241_/P
CC____AACCGG__CCGG____AT____
10._RUQ_1431
____GGAACCGG__CC________AGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_1431
__________________AA______CC
3._GU_241_/P
AA______GG________AA__GG__CC
4._GU_241_/P
AA______AG________AA__GG__CC
5._RUQ_1431
AA______GG________AA__GG__CC
6._GU_241_/P
AA______GG________AA__GG__CC
7._GU_241_/P
AA______GG________AA__GG__CC
8._GU_241_/P
AA______GG________AA__GG__CC
9._GU_241_/P
AA______GG________AA__GG__CC
10._RUQ_1431
AA__________CC____AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGAGAACCAAAAACAAAAAACC
1._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
2._RUQ_1431
AC__CC______GGAA________AACC
3._GU_241_/P
AC____CC____GG______________
4._GU_241_/P
AC____CC____GG______________
5._RUQ_1431
AC____CC____GG______________
6._GU_241_/P
AC____CC____GG______________
7._GU_241_/P
AC____CC____GG______________
8._GU_241_/P
AC____CC____GG______________
9._GU_241_/P
AC____CC____GG______________
10._RUQ_1431
AC__CCCC____GGAATT____TTAA__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
1._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
2._RUQ_1431
__GG____GG____________AAX_XX_X
3._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
4._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
5._RUQ_1431
__GGCC______CCGG__AACTAAX_XX_X
6._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
7._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
8._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
9._GU_241_/P
__GGCC______CCGG__AACTAAX_XX_X
10._RUQ_1431
__GGCC__GGCC__________AAX_XX_X

Input profile: GU_241_/P RUQ_1431

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_241_/P MITC-000612

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_241_/P RUQ_1431

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_241_/P

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 9
 Dapeng Zhang, 2016

4._GU_241_/P

51.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y33
 Dapeng Zhang, 2016

5._GU_241_/P RUQ_1431

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 10
 Dapeng Zhang, 2016

7._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 3
 Dapeng Zhang, 2016

8._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 2
 Dapeng Zhang, 2016

9._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 1
 Dapeng Zhang, 2016

10._GU_241_/P RUQ_1431

48.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998