SNP Profiles of GU 261   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_261_/P___
____________GG______________
2._GU_261_/P___
__________CC________GG______
3._GU_261_/P___
__________CCGG__AA__________
4._GU_261_/P___
__________CCGG__AA__________
5._GU_261_/P___
__________CCGG__AA__________
6._GU_261_/P___
__________CCGG__AA__________
7._GU_261_/P___
__________CCGG__AA__________
8._GU_261_/P___
__________CCGG__AA__________
9._GU_261_/P___
__________CCGG__AA__________
10._GU_261_/P___
__________CCGG__AA__________
11._GU_261_/P___
__________CCGG__AA__________
12._GU_261_/P___
__________CCGG__AA__________
13._GU_261_/P___
__________CCGG__AA__________
14._GU_261_/P___
__________CCGG__AA__________
15._GU_261_/P___
__________CCGG__AA__________
16._GU_261_/P___
__________CCGG__AA__________
17._GU_261_/P___
__________CCGG__AA__________
18._GU_261_/P___
__________CCGG__AA__________
19._GU_261_/P___
__________CCGG__AA__________
20._GU_261_/P___
__________CCGG__AA__________
21._GU_261_/P___
__________CCGG__AA__________
22._GU_261_/P___
__________CCGG__AA__________
23._GU_261_/P___
__________CCGG__AA__________
24._GU_261_/P___
__________CCGG__AA__________
25._GU_261_/P___
__________CCGG__AA__________
26._GU_261_/P___
__________CCGG__AA__________
27._GU_261_/P___
__________CCGG__AA__________
28._GU_261_/P___
__________CCGG__AA__________
29._GU_261_/P___
__________CCGG__AA__________
30._GU_261_/P___
__________CCGG__AA__________
31._GU_261_/P___
__________CCGG__AA__________
32._GU_261_/P___
__________CCGG__AA__________
33._GU_261_/P___
__________CCGG__AA__________
34._GU_261_/P___
__________CCGG______________
35._GU_261_/P___
__________CCGG__AA__________
36._GU_261_/P___
__________CCGG__AA__________
37._GU_261_/P___
__________CC__GG____GG______
38._GU_261_/P___
__________CCGG______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGGGGGAAAA
1._GU_261_/P___
__TT____________AA__CC______
2._GU_261_/P___
______________CCAA__GG____TT
3._GU_261_/P___
__TTTT__CC__TT__AACCCCGGTTTT
4._GU_261_/P___
__TTTT______TT__AACCCCGGTT__
5._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
6._GU_261_/P___
__TTTT______TT__AACCCCGGTT__
7._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
8._GU_261_/P___
__TTTT__CC__TT__AACCCCGGTTTT
9._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
10._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
11._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
12._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
13._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
14._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
15._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
16._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
17._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
18._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
19._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
20._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
21._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
22._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
23._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
24._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
25._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
26._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
27._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
28._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
29._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
30._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
31._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
32._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
33._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
34._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
35._GU_261_/P___
__TTTT______TT__AACCCCGGTTTT
36._GU_261_/P___
__TTTT______TT__AACCCC__TTTT
37._GU_261_/P___
__TT__TT______CCAACCCCGGTTTT
38._GU_261_/P___
__GTTT______TT__AACCCC__TT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
1._GU_261_/P___
__________GG____________GG__
2._GU_261_/P___
____GGAAGGGG______________GG
3._GU_261_/P___
CC____AACCGG__CCGG____AA____
4._GU_261_/P___
CC____AACCGG__CCGG____AA____
5._GU_261_/P___
CC____AACCGG__CCGG____AA____
6._GU_261_/P___
CC____AACCGG__CCGG____AA____
7._GU_261_/P___
CC____AACCGG__CCGG____AA____
8._GU_261_/P___
CC____AACCGG__CCGG____AA____
9._GU_261_/P___
CC____AACCGG__CCGG____AA____
10._GU_261_/P___
CC____AACCGG__CCGG____AA____
11._GU_261_/P___
CC____AACCGG__CCGG____AA____
12._GU_261_/P___
CC____AACCGG__CCGG____AA____
13._GU_261_/P___
CC____AACCGG__CCGG____AA____
14._GU_261_/P___
CC____AACCGG__CCGG____AA____
15._GU_261_/P___
CC____AACCGG__CCGG____AA____
16._GU_261_/P___
CC____AACCGG__CCGG____AA____
17._GU_261_/P___
CC____AACCGG__CCGG____AA____
18._GU_261_/P___
CC____AACCGG__CCGG____AA____
19._GU_261_/P___
CC____AACCGG__CCGG____AA____
20._GU_261_/P___
CC____AACCGG__CCGG____AA____
21._GU_261_/P___
CC____AACCGG__CCGG____AA____
22._GU_261_/P___
CC____AACCGG__CCGG____AA____
23._GU_261_/P___
CC____AACCGG__CCGG____AA____
24._GU_261_/P___
CC____AACCGG__CCGG____AA____
25._GU_261_/P___
CC____AACCGG__CCGG____AA____
26._GU_261_/P___
CC____AACCGG__CCGG____AA____
27._GU_261_/P___
CC____AACCGG__CCGG____AA____
28._GU_261_/P___
CC____AACCGG__CCGG____AA____
29._GU_261_/P___
CC____AACCGG__CCGG____AA____
30._GU_261_/P___
CC____AACCGG__CCGG____AA____
31._GU_261_/P___
CC____AACCGG__CCGG____AA____
32._GU_261_/P___
CC____AACCGG__CCGG____AA____
33._GU_261_/P___
CC____AACCGG__CCGG____AA____
34._GU_261_/P___
CC____AACCGG__CCGG____AA____
35._GU_261_/P___
CC____AACCGG__CCGG____AA____
36._GU_261_/P___
CC____AACCGG__CCGG____AA____
37._GU_261_/P___
____GGAACCGG__CC________GGGG
38._GU_261_/P___
CC____ACCCGG__CCGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GU_261_/P___
__________________AA______CC
2._GU_261_/P___
AATT________CC____________CC
3._GU_261_/P___
AA______GG________AA__GG__CC
4._GU_261_/P___
AA______GG________AA__GG__CC
5._GU_261_/P___
AA______GG________AA__GG__CC
6._GU_261_/P___
AA______GG________AA__GG__CC
7._GU_261_/P___
AA______GG________AA__GG__CC
8._GU_261_/P___
AA______GG________AA__GG__CC
9._GU_261_/P___
AA______GG________AA__GG__CC
10._GU_261_/P___
AA______GG________AA__GG__CC
11._GU_261_/P___
AA______GG________AA__GG__CC
12._GU_261_/P___
AA______GG________AA__GG__CC
13._GU_261_/P___
AA______GG________AA__GG__CC
14._GU_261_/P___
AA______GG________AA__GG__CC
15._GU_261_/P___
AA______GG________AA__GG__CC
16._GU_261_/P___
AA______GG________AA__GG__CC
17._GU_261_/P___
AA______GG________AA__GG__CC
18._GU_261_/P___
AA______GG________AA__GG__CC
19._GU_261_/P___
AA______GG________AA__GG__CC
20._GU_261_/P___
AA______GG________AA__GG__CC
21._GU_261_/P___
AA______GG________AA__GG__CC
22._GU_261_/P___
AA______GG________AA__GG__CC
23._GU_261_/P___
AA______GG________AA__GG__CC
24._GU_261_/P___
AA______GG________AA__GG__CC
25._GU_261_/P___
AA______GG________AA__GG__CC
26._GU_261_/P___
AA______GG________AA__GG__CC
27._GU_261_/P___
AA______GG________AA__GG__CC
28._GU_261_/P___
AA______GG________AA__GG__CC
29._GU_261_/P___
AA______GG________AA__GG__CC
30._GU_261_/P___
AA______GG________AA__GG__CC
31._GU_261_/P___
AA______GG________AA__GG__CC
32._GU_261_/P___
AA______GG________AA__GG__CC
33._GU_261_/P___
AA______GG________AA__GG__CC
34._GU_261_/P___
AA______GG________AA__GG__CC
35._GU_261_/P___
AA______GG____________GG__CC
36._GU_261_/P___
AA______GG________AA__GG__CC
37._GU_261_/P___
AA__________CC____AA__GG__CC
38._GU_261_/P___
AA______GG________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGAGAACCAAAACCAAAAAACC
1._GU_261_/P___
AC__CC______GGAA________AACT
2._GU_261_/P___
AC__CC____________GG________
3._GU_261_/P___
AC____CC____GG______________
4._GU_261_/P___
AC____CC____GG______________
5._GU_261_/P___
AC____CC____GG______________
6._GU_261_/P___
AC____CC____GG______________
7._GU_261_/P___
AC____CC____GG______________
8._GU_261_/P___
AC____CC____GG______________
9._GU_261_/P___
AC____CC____GG______________
10._GU_261_/P___
AC____CC____GG______________
11._GU_261_/P___
AC____CC____GG______________
12._GU_261_/P___
AC____CC____GG______________
13._GU_261_/P___
AC____CC____GG______________
14._GU_261_/P___
AC____CC____GG______________
15._GU_261_/P___
AC____CC____GG______________
16._GU_261_/P___
AC____CC____GG______________
17._GU_261_/P___
AC____CC____GG______________
18._GU_261_/P___
AC____CC____GG______________
19._GU_261_/P___
AC____CC____GG______________
20._GU_261_/P___
AC____CC____GG______________
21._GU_261_/P___
AC____CC____GG______________
22._GU_261_/P___
AC____CC____GG______________
23._GU_261_/P___
AC____CC____GG______________
24._GU_261_/P___
AC____CC____GG______________
25._GU_261_/P___
AC____CC____GG______________
26._GU_261_/P___
AC____CC____GG______________
27._GU_261_/P___
AC____CC____GG______________
28._GU_261_/P___
AC____CC____GG______________
29._GU_261_/P___
AC____CC____GG______________
30._GU_261_/P___
AC____CC____GG______________
31._GU_261_/P___
AC____CC____GG______________
32._GU_261_/P___
AC____CC____GG______________
33._GU_261_/P___
AC____CC____GG______________
34._GU_261_/P___
AC____CC____GG______________
35._GU_261_/P___
AC____CC____GG______________
36._GU_261_/P___
AC____CC____GG______________
37._GU_261_/P___
AC__CCCC____GGAATT____TTAA__
38._GU_261_/P___
AC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
1._GU_261_/P___
__GG____GG____________GGX_XX_X
2._GU_261_/P___
GGCCCC______________CC__X_XX_X
3._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
4._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
5._GU_261_/P___
__GGCC______CCGG__AA__GGX_XX_X
6._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
7._GU_261_/P___
__GGCC________GG__AACCGGX_XX_X
8._GU_261_/P___
__GGCC______CCGG__AACCAGX_XX_X
9._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
10._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
11._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
12._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
13._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
14._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
15._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
16._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
17._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
18._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
19._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
20._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
21._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
22._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
23._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
24._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
25._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
26._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
27._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
28._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
29._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
30._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
31._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
32._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
33._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
34._GU_261_/P___
__GG________CCGG__AACCGGX_XX_X
35._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
36._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X
37._GU_261_/P___
__GGCC____CC__________GGX_XX_X
38._GU_261_/P___
__GGCC______CCGG__AACCGGX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_261_/P RUQ_1370

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_261_/P RUQ_1370

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

3._GU_261_/P RUQ_1370

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_261_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

5._GU_261_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

6._GU_261_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

7._GU_261_/P

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

8._GU_261_/P

47.1 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

9._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

10._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

11._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

12._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

13._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

14._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

15._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

16._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

17._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

18._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

19._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

20._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

21._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

22._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

23._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

24._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

25._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

26._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

27._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

28._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

29._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

30._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

31._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

32._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

33._GU_261_/P

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

34._GU_261_/P

46.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

35._GU_261_/P

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

36._GU_261_/P

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

37._GU_261_/P RUQ_1370

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._GU_261_/P

43.5 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998