SNP Profiles of ICS 39 View Data

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_Input profile	CC	AC	AA	AC	AA	AG	AG	CC	AA	GG	GG	AA	AA	CC
1._RUQ_1089	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
2._ICS_39_Fld#_30_Plt#_2	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
3._RUQ_1089	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
4._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
5._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
6._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
7._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
8._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
9._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
10._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
11._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
12._ICS_39	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
13._GC-01-085-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
14._GC-01-085-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
15._GC-01-085-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
16._GC-01-85-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
17._GC-01-85-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
18._GC-01-85-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
19._GC-01-85-5-02	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AC	AA	GG	AA	CC	AG	GG
1._RUQ_1089	__	TT	__	__	__	__	__	AC	__	CC	__	__	__	__
2._ICS_39_Fld#_30_Plt#_2	AG	AA	GG	AG	GG	AA	AG	AC	AG	CC	AG	AC	AG	AG
3._RUQ_1089	__	TT	TT	__	__	TT	__	AC	TT	CC	AG	GG	CT	CC
4._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	GG	AG	GT	CT	CT
5._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	GG	AG	GT	CT	CT
6._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
7._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
8._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
9._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
10._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
11._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
12._ICS_39	__	GT	CC	__	__	TT	__	AC	CT	CG	AG	GT	CT	CT
13._GC-01-085-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
14._GC-01-085-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
15._GC-01-085-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
16._GC-01-85-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
17._GC-01-85-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
18._GC-01-85-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT
19._GC-01-85-5-02	CT	GT	CC	TT	GG	TT	CT	AC	CT	CG	AG	GT	CT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	GG	AC	GG	AG	GG	AG	GG	CC	TT	TT	GG	GG	AT
1._RUQ_1089	__	__	__	__	AG	__	__	__	__	__	__	GG	__	__
2._ICS_39_Fld#_30_Plt#_2	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG	AT
3._RUQ_1089	__	__	AC	CC	AG	__	CT	GG	__	__	TT	__	__	AT
4._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
5._ICS_39	__	__	AC	GG	AG	__	CT	GG	__	__	AT	__	__	AT
6._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
7._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
8._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
9._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
10._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
11._ICS_39	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__	AT
12._ICS_39	__	__	__	CG	AG	__	CT	GG	__	__	AT	__	__	AT
13._GC-01-085-5-02	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
14._GC-01-085-5-02	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
15._GC-01-085-5-02	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG	AT
16._GC-01-85-5-02	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
17._GC-01-85-5-02	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
18._GC-01-85-5-02	CC	AG	AC	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT
19._GC-01-85-5-02	CC	AG	__	CG	AG	CC	CT	GG	GG	AT	AT	AG	AG	AT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	AA	GG	AA	AA	CC	AA	AC	GG	GG	AA
1._RUQ_1089	__	__	__	__	__	__	__	__	CC	__	__	__	GG	AA
2._ICS_39_Fld#_30_Plt#_2	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CG	AC
3._RUQ_1089	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG	AA
4._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
5._ICS_39	__	__	__	AG	__	__	__	__	CC	__	GT	__	CC	AC
6._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
7._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
8._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
9._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
10._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
11._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
12._ICS_39	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC	AC
13._GC-01-085-5-02	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
14._GC-01-085-5-02	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
15._GC-01-085-5-02	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC	AC
16._GC-01-85-5-02	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
17._GC-01-85-5-02	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
18._GC-01-85-5-02	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC
19._GC-01-85-5-02	CT	AG	AG	GG	AT	CG	CT	CC	CC	GG	GT	AA	CC	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	AA	AA	CC	GG	AA	AA	AC	AA	AC	CC	GG
1._RUQ_1089	__	CC	__	__	__	GG	GG	__	__	__	__	AC	TT	__
2._ICS_39_Fld#_30_Plt#_2	AG	GG	AG	AA	AG	AA	AG	AG	AC	CC	AC	AC	CC	AG
3._RUQ_1089	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
4._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
5._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
6._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
7._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
8._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
9._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
10._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
11._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
12._ICS_39	__	__	CT	__	__	GT	__	__	__	__	__	__	__	__
13._GC-01-085-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
14._GC-01-085-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
15._GC-01-085-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
16._GC-01-85-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
17._GC-01-85-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA
18._GC-01-85-5-02	CT	CC	CT	AG	__	GT	AG	CT	GT	GT	GT	CC	GG	AA
19._GC-01-85-5-02	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG	AA

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	GG	GG	GG	GG	CC	AG	GG	GG	AT	AA	AG	X_X	X_X	X_X
1._RUQ_1089	CC	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X	X_X
2._ICS_39_Fld#_30_Plt#_2	CG	GG	GG	GG	AC	AA	GG	AG	AA	AG	AA	X_X	X_X	X_X
3._RUQ_1089	CC	CC	__	__	__	CT	GG	__	AT	TT	AG	X_X	X_X	X_X
4._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
5._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
6._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
7._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
8._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
9._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
10._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
11._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
12._ICS_39	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
13._GC-01-085-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
14._GC-01-085-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
15._GC-01-085-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
16._GC-01-85-5-02	CG	CC	CC	GG	AC	TT	GG	__	AA	CT	AA	X_X	X_X	X_X
17._GC-01-85-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
18._GC-01-85-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X
19._GC-01-85-5-02	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._ICS_39 RUQ_1089

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.380 LCT
0.051 Nan
0.464

2._ICS_39 ICS_39_Fld#_30_Plt#_2

64.2 %
81 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

3._ICS_39 RUQ_1089

45.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_39

41.2 %
34 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

5._ICS_39

41.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

6._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

7._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

8._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

9._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

10._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

11._ICS_39

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

12._ICS_39

37.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

13._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

14._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

15._ICS_39 GC-01-085-5-02

32.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

16._ICS_39 GC-01-85-5-02

30.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

17._ICS_39 GC-01-85-5-02

30.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

18._ICS_39 GC-01-85-5-02

30 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

19._ICS_39 GC-01-85-5-02

29.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998