SNP Profiles of ICS 6 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AG	AA	AG	GG	AA	AA	AA	GG	AG	AA	AA	AC
1._GC-08-49-1-60	AC	CC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
2._RUQ_721	__	__	__	__	__	__	AA	__	__	__	__	__	__	__
3._RUQ_721	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__
4._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
5._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
6._RUQ_721	__	__	__	__	__	CC	__	TT	__	__	AG	__	__	__
7._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
8._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
9._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
10._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
11._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
12._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
13._ICS_6	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
14._ICS_6	__	__	__	__	__	CC	AA	__	TT	__	__	__	__	__
15._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
16._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
17._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
18._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
19._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
20._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
21._GC-08-049-1-60	AC	CC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	GG	AA	AA	GG	AA	AA	CC	AA	CC	AA	AC	GG
1._GC-08-49-1-60	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CC	AG	AC	AG
2._RUQ_721	__	TT	__	__	__	__	__	__	CC	__	CG	__	__	__
3._RUQ_721	__	TT	CC	__	AA	__	CT	__	CC	TT	CG	AG	GT	CC
4._ICS_6	__	GT	__	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
5._GC-08-049-1-60	CT	GT	__	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
6._RUQ_721	__	TT	__	TT	__	__	__	TT	CC	TT	CG	AA	GT	CC
7._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
8._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
9._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
10._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
11._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
12._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
13._ICS_6	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
14._ICS_6	__	TT	CC	__	AA	__	TT	__	CC	TT	GG	AA	GT	CC
15._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
16._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
17._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
18._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
19._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
20._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
21._GC-08-049-1-60	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	AT	GG	AA	GG	GG	GG	GG	GG	CC	TT	AT	GG	AG
1._GC-08-49-1-60	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
2._RUQ_721	__	__	__	__	__	GG	__	__	__	__	__	__	GG	__
3._RUQ_721	__	__	__	AA	CC	GG	__	CC	GG	__	__	AT	__	__
4._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
5._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
6._RUQ_721	__	__	GG	AA	CC	GG	__	CC	__	__	__	__	GG	AG
7._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
8._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
9._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
10._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
11._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
12._ICS_6	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
13._ICS_6	CT	__	__	AC	CG	__	__	CT	GG	__	__	AT	__	__
14._ICS_6	TT	__	__	AA	__	GG	__	CC	GG	__	__	AT	__	__
15._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
16._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
17._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
18._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
19._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
20._GC-08-049-1-60	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
21._GC-08-049-1-60	CT	AT	AG	AC	CG	__	GG	CT	GG	GG	AT	AT	AG	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	GG	GG	GG	AT	CG	AA	CC	CC	GG	AA	AA	CC
1._GC-08-49-1-60	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CC
2._RUQ_721	__	__	__	__	__	__	__	__	__	CC	__	__	__	CC
3._RUQ_721	AT	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
4._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
5._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
6._RUQ_721	AT	__	__	__	__	__	CG	__	__	CC	__	TT	__	CC
7._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
8._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
9._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
10._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
11._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
12._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
13._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CC
14._ICS_6	AT	__	__	__	GG	__	__	__	__	CC	__	TT	__	CC
15._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
16._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
17._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
18._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
19._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
20._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC
21._GC-08-049-1-60	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	AA	GG	AG	AG	AG	CC	GG	AG	AC	AC	AA	CC	CC
1._GC-08-49-1-60	AC	AG	GG	AG	AG	AG	AC	AG	AG	AC	AC	AC	CC	CC
2._RUQ_721	AC	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT
3._RUQ_721	AC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
4._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
5._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
6._RUQ_721	AA	__	CC	CT	__	__	GG	GG	CT	__	__	TT	CC	__
7._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
8._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
9._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
10._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
11._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
12._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
13._ICS_6	AC	__	__	CT	__	__	GT	__	__	__	__	__	__	__
14._ICS_6	AC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
15._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
16._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
17._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
18._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
19._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
20._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG
21._GC-08-049-1-60	AC	CT	CC	CT	AG	AG	GT	AG	CT	GT	GT	GT	CC	GG

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AA	GG	GG	GG	AG	AC	AA	GG	AA	AA	AG	AA	X_X	X_X
1._GC-08-49-1-60	AG	CG	GG	GG	GG	AC	AA	GG	AG	AA	AG	AA	X_X	X_X
2._RUQ_721	__	CC	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
3._RUQ_721	__	CC	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
4._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
5._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
6._RUQ_721	__	CC	CC	__	__	AC	__	__	__	__	__	AA	X_X	X_X
7._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
8._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
9._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
10._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
11._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
12._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
13._ICS_6	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
14._ICS_6	__	CC	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
15._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
16._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
17._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
18._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
19._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
20._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
21._GC-08-049-1-60	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X

Input profile: ICS_6 RUQ_721

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._ICS_6 GC-08-49-1-60

81.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

2._ICS_6 RUQ_721

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.696 Cri
0.299

3._ICS_6 RUQ_721

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_6

48.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

5._ICS_6 GC-08-049-1-60

47.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._ICS_6 RUQ_721

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

8._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

9._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

10._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

11._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

12._ICS_6

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

13._ICS_6

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

14._ICS_6

47.1 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

15._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

16._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

18._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

19._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

20._ICS_6 GC-08-049-1-60

46.9 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

21._ICS_6 GC-08-049-1-60

46.9 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998