SNP Profiles of MAN 15 /2 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	CC	AG	AC	AA	AG	AG	CC	AA	GG	AG	AA	AA	CC
1._RUQ_86	__	__	__	__	__	__	AG	__	__	__	__	__	__	__
2._MAN15/2[BRA]	__	__	__	__	__	CT	__	__	__	__	AG	__	__	__
3._MAN_15_/2_[BRA]	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
4._RUQ_86	__	__	__	__	__	CT	__	GG	__	__	AG	__	__	__
5._MAN_15_/2_[BRA]	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
6._RUQ_86	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
7._MAN_15_/2_[BRA]	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
8._MAN_15_/2_[BRA]	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
9._GC-05-072-2-23	AC	CC	AG	AC	TT	CT	GG	GG	AA	CC	AG	TT	TT	GG
10._GC-05-072-2-23	AC	CC	AG	AC	TT	CT	GG	GG	AA	CC	AG	TT	TT	GG
11._GC-05-072-2-23	AC	CC	AG	AC	TT	CT	GG	GG	AA	CC	AG	TT	TT	GG
12._GC-05-072-2-23	AC	CC	AG	AC	TT	CT	GG	GG	AA	CC	AG	TT	TT	GG
13._GC-05-072-2-23	AC	CC	AG	AC	TT	CT	GG	GG	AA	CC	AG	TT	TT	GG
14._MAN_15_/2_[BRA]	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
15._MAN_15_/2_[BRA]	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
16._MAN_15_/2_[BRA]	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__
17._MAN_15_/2_[BRA]	__	__	__	__	__	CC	AA	__	__	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	AA	AG	CC	GG	AG	AG	CC	GG	CG	AA	AC	AG
1._RUQ_86	__	GT	__	__	__	__	__	__	CC	__	CG	__	__	__
2._MAN15/2[BRA]	__	__	__	__	__	__	__	CT	CC	__	CG	__	__	CT
3._MAN_15_/2_[BRA]	__	GT	TT	__	CC	__	CT	__	CC	CC	CG	AA	GT	CT
4._RUQ_86	__	__	__	CT	__	__	__	CT	CC	CC	CG	AA	GT	CT
5._MAN_15_/2_[BRA]	__	GT	TT	__	CC	__	CT	__	CC	CC	CG	AA	GT	CT
6._RUQ_86	__	GT	TT	__	CC	__	CT	__	CC	CC	CG	AG	GT	CT
7._MAN_15_/2_[BRA]	__	GT	TT	__	CC	__	CT	__	CC	CC	CG	AA	GT	CC
8._MAN_15_/2_[BRA]	__	GT	TT	__	CC	__	CT	__	CC	CC	CG	AA	GT	CC
9._GC-05-072-2-23	CT	GT	TT	TT	CC	GG	CT	CT	CC	CC	CG	AA	GT	CC
10._GC-05-072-2-23	CT	GT	TT	TT	CC	GG	CT	CT	CC	CC	CG	AA	GT	CC
11._GC-05-072-2-23	CT	GT	TT	TT	__	GG	CT	CT	CC	CC	CG	AA	GT	CC
12._GC-05-072-2-23	CT	GT	TT	TT	__	GG	CT	CT	CC	CC	CG	AA	GT	CC
13._GC-05-072-2-23	CT	GT	TT	TT	__	GG	CT	CT	CC	CC	CG	AA	GT	CC
14._MAN_15_/2_[BRA]	__	GT	TT	__	__	__	CT	__	CC	CC	CG	AA	GT	CC
15._MAN_15_/2_[BRA]	__	GT	TT	__	__	__	CT	__	CC	CC	CG	AA	GT	CC
16._MAN_15_/2_[BRA]	__	GT	TT	__	__	__	CT	__	CC	CC	CG	AA	GT	CC
17._MAN_15_/2_[BRA]	__	TT	TT	__	AA	__	__	__	CC	CC	GG	AA	GG	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AT	GG	AC	CG	AG	GG	AA	GG	CC	AT	AT	AG	GG
1._RUQ_86	__	__	__	__	__	AG	__	__	__	__	__	__	AG	__
2._MAN15/2[BRA]	__	__	GG	AC	CG	AG	__	__	__	__	__	__	__	GG
3._MAN_15_/2_[BRA]	CC	__	__	AC	CG	AG	__	TT	GG	__	__	AT	__	__
4._RUQ_86	__	__	GG	AC	CG	AG	__	TT	__	__	__	__	AG	GG
5._MAN_15_/2_[BRA]	CC	__	__	AC	CG	AG	__	TT	GG	__	__	AT	__	__
6._RUQ_86	CC	__	__	AC	CG	AG	__	TT	GG	__	__	AT	__	__
7._MAN_15_/2_[BRA]	CC	__	__	AA	CG	AA	__	TT	GG	__	__	AT	__	__
8._MAN_15_/2_[BRA]	CC	__	__	AA	CG	AA	__	TT	GG	__	__	AT	__	__
9._GC-05-072-2-23	CC	AT	GG	AA	CG	AA	GG	TT	GG	GG	AT	AT	AG	GG
10._GC-05-072-2-23	CC	AT	GG	AA	CG	AA	GG	TT	GG	GG	AT	AT	AG	GG
11._GC-05-072-2-23	CC	AT	GG	AA	CG	AA	GG	TT	GG	GG	AT	AT	AG	GG
12._GC-05-072-2-23	CC	AT	GG	AA	CG	AA	GG	TT	GG	GG	AT	AT	AG	GG
13._GC-05-072-2-23	CC	AT	GG	AA	CG	AA	GG	TT	GG	GG	AT	AT	AG	GG
14._MAN_15_/2_[BRA]	CC	__	__	AA	CG	AA	__	TT	GG	__	__	AT	__	__
15._MAN_15_/2_[BRA]	CC	__	__	AA	CG	AA	__	TT	GG	__	__	AT	__	__
16._MAN_15_/2_[BRA]	CC	__	__	AA	CG	AA	__	TT	GG	__	__	AT	__	__
17._MAN_15_/2_[BRA]	__	__	__	AC	CG	GG	__	CC	GG	__	__	TT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	GG	GG	GG	AA	CG	AA	AC	AC	AA	AC	AG	CG
1._RUQ_86	__	__	__	__	__	__	__	__	__	AC	__	__	__	GG
2._MAN15/2[BRA]	AA	CT	__	__	__	__	CC	__	__	__	__	__	__	CG
3._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	GG
4._RUQ_86	AA	__	__	__	__	__	__	__	__	AC	__	GT	__	CG
5._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	GG
6._RUQ_86	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	GG
7._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
8._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
9._GC-05-072-2-23	AA	CT	AG	GG	GG	AA	CG	__	CC	AC	AG	GT	GG	CG
10._GC-05-072-2-23	AA	CT	AG	GG	GG	AA	CG	__	CC	AC	AG	GT	GG	CG
11._GC-05-072-2-23	AA	CT	AG	GG	GG	AA	CG	__	CC	AC	AG	GT	GG	CG
12._GC-05-072-2-23	AA	CT	AG	GG	GG	AA	CG	__	CC	AC	AG	GT	GG	CG
13._GC-05-072-2-23	AA	CT	AG	GG	GG	AA	CG	__	CC	AC	AG	GT	GG	CG
14._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
15._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
16._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
17._MAN_15_/2_[BRA]	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	AG	GG	AA	AA	CC	AG	AA	AC	AC	AA	AC	CC
1._RUQ_86	AC	__	CT	__	__	__	GG	AG	__	__	__	__	AC	TT
2._MAN15/2[BRA]	AC	__	CT	__	__	__	__	__	__	GT	__	__	__	__
3._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
4._RUQ_86	AC	__	CT	CC	__	__	GG	AG	TT	__	__	TT	AC	__
5._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
6._RUQ_86	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
7._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
8._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
9._GC-05-072-2-23	AC	CC	CT	CC	AA	AA	GG	AG	TT	GT	GT	TT	AC	GG
10._GC-05-072-2-23	AC	CC	CT	CC	AA	AA	GG	AG	TT	GT	GT	TT	AC	GG
11._GC-05-072-2-23	AC	CC	CT	CC	AA	AA	GG	AG	TT	GT	GT	TT	AC	GG
12._GC-05-072-2-23	AC	CC	CT	CC	AA	AA	GG	AG	TT	GT	GT	TT	AC	GG
13._GC-05-072-2-23	AC	CC	CT	CC	AA	AA	GG	AG	TT	GT	GT	TT	AC	GG
14._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
15._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
16._MAN_15_/2_[BRA]	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
17._MAN_15_/2_[BRA]	AA	__	__	CT	__	__	GG	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	CC	AG	GG	AG	CC	AG	GG	GG	AA	AG	AA	X_X	X_X
1._RUQ_86	__	GG	__	__	AG	__	__	__	__	__	__	AA	X_X	X_X
2._MAN15/2[BRA]	AG	CC	CT	__	__	__	__	__	__	__	CT	__	X_X	X_X
3._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	__	AA	X_X	X_X
4._RUQ_86	__	GG	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X
5._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
6._RUQ_86	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
7._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
8._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
9._GC-05-072-2-23	AA	GG	CT	CC	GG	CC	CT	GG	CC	AA	CT	AA	X_X	X_X
10._GC-05-072-2-23	AA	GG	CT	CC	GG	CC	CT	GG	CC	AA	CT	AA	X_X	X_X
11._GC-05-072-2-23	AA	GG	CT	CC	GG	CC	CT	GG	CC	AA	CT	AA	X_X	X_X
12._GC-05-072-2-23	AA	GG	CT	CC	GG	CC	CT	GG	CC	AA	CT	AA	X_X	X_X
13._GC-05-072-2-23	AA	GG	CT	CC	GG	CC	CT	GG	CC	AA	CT	AA	X_X	X_X
14._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
15._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
16._MAN_15_/2_[BRA]	__	GG	CT	__	__	__	CT	GG	__	AA	CT	AA	X_X	X_X
17._MAN_15_/2_[BRA]	__	GG	CC	__	__	__	TT	GG	__	AA	TT	AA	X_X	X_X

Input profile: MAN_15_/2_[BRA] RUQ_86

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._MAN_15_/2_[BRA] RUQ_86

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._MAN_15_/2_[BRA] MAN15/2[BRA]

61.4 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

3._MAN_15_/2_[BRA]

54.4 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._MAN_15_/2_[BRA]

52.9 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

6._MAN_15_/2_[BRA] RUQ_86

51.4 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA]

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

9._MAN_15_/2_[BRA] GC-05-072-2-23

50 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

10._MAN_15_/2_[BRA] GC-05-072-2-23

50 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._MAN_15_/2_[BRA] GC-05-072-2-23

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._MAN_15_/2_[BRA] GC-05-072-2-23

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

13._MAN_15_/2_[BRA] GC-05-072-2-23

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._MAN_15_/2_[BRA]

48.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

15._MAN_15_/2_[BRA]

48.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

16._MAN_15_/2_[BRA]

48.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA]

43.8 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998