SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAACCAAGGGGCCAAGGGGAAAAAA
1._PA_150_[PER]_Fld#_173_Plt#_1
AACCAACCAAGGGGCCAAGGGGAAAAAA
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
4._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
5._RUQ_1731
____________GG______________
6._PA_150_[PER]
__________CCGG__AA__________
7._PA_150_[PER]
__________CCGG__AA__________
8._PA_150_[PER]
__________CCGG__AA__________
9._PA_150_[PER]
__________CCGG__AA__________
10._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
11._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
12._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
13._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
16._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
17._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
18._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
19._PA_150_[PER]
__________TTGG__AA__________
20._PA_150_[PER]
__________CCAG__AA__________
21._PA_150_[PER]
__________CCAG__AA__________
22._PA_150_[PER]
__________CCAG__AA__________
23._PA_150_[PER]
__________CCAG__AA__________
24._PA_150_[PER]
__________TTGG__AA__________
25._PA_150_[PER]
__________TTGG__AA__________
26._PA_150_[PER]
__________TTGG__AA__________
27._PA_150_[PER]
__________TTGG__AA__________
28._PA_150_[PER]
__________CTGG__AA__________
29._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
30._PA_150_[PER]
__________CTAG__AT__________
31._PA_150_[PER]
__________CTGG______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAACGGAAGGACGGCCAGCCGG
1._PA_150_[PER]_Fld#_173_Plt#_1
AAAAAAAAACGGAAGGACGGCCAGCC__
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
4._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
5._RUQ_1731
__TT____________AC__GG______
6._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
7._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
8._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
9._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
10._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
11._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
12._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
13._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
16._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
17._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
18._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
19._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
20._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
21._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
22._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
23._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
24._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
25._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
26._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
27._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
28._PA_150_[PER]
__TTTT__AA__TT__ACTTCCAAGGCT
29._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
30._PA_150_[PER]
__GTCC__AC__CT__AACTCGAGGTCT
31._PA_150_[PER]
__GTTT__CC______CCTTCGAGGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATGGAAGGGGGGGGGGCCTTAAGGGG
1._PA_150_[PER]_Fld#_173_Plt#_1
AGATGGAAGGGGGGGGGGCCTTAAGGGG
2._GC-01-34-2-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
4._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
5._RUQ_1731
__________GG____________GG__
6._PA_150_[PER]
CT____AA__GG__CCGG____AA____
7._PA_150_[PER]
CT____AACCGG__CCGG____AA____
8._PA_150_[PER]
CT____AACCGG__CCGG____AA____
9._PA_150_[PER]
CT____AACCGG__CCGG____AA____
10._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
11._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
12._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
13._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
14._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
15._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
16._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
17._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
18._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
19._PA_150_[PER]
TT____AACGAG__CCGG____AT____
20._PA_150_[PER]
CT____AACCAG__CCGG____AT____
21._PA_150_[PER]
CT____AACCAG__CCGG____AT____
22._PA_150_[PER]
CT____AACCAG__CCGG____AT____
23._PA_150_[PER]
CT____AACCAG__CCGG____AT____
24._PA_150_[PER]
TT____AACGAG__CCGG____AT____
25._PA_150_[PER]
TT____AACGAG__CCGG____AT____
26._PA_150_[PER]
TT____AACGAG__CCGG____AT____
27._PA_150_[PER]
TT____AACGAG__CCGG____AT____
28._PA_150_[PER]
CC____AACCAA__CTGG____TT____
29._GC-01-034-2-11
CTATGGACCCAAGGCCCGGTAAATAGGG
30._PA_150_[PER]
CT____ACCCAA__CCCG____AT____
31._PA_150_[PER]
______AC__AA__CCCC____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGAAGGGGCCACAAAAAGCG
1._PA_150_[PER]_Fld#_173_Plt#_1
AAAAGGGGGGAAGGGGCCACAAAAAGCG
2._GC-01-34-2-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
4._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
5._RUQ_1731
__________________AA______CG
6._PA_150_[PER]
AA______GG________AC__TT__CG
7._PA_150_[PER]
AA______GG________AC__TT__CG
8._PA_150_[PER]
AA______GG________AC__TT__CG
9._PA_150_[PER]
AA______GG________AC__TT__CG
10._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
11._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
12._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
13._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
14._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
15._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
16._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
17._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
18._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
19._PA_150_[PER]
AA______GG________AC__TT__GG
20._PA_150_[PER]
AA______GG________AC__GT__CG
21._PA_150_[PER]
AA______GG________AC__GT__CG
22._PA_150_[PER]
AA______GG________AC__GT__CG
23._PA_150_[PER]
AA______GG________AC__GT__CG
24._PA_150_[PER]
AA______GG________AC__TT__GG
25._PA_150_[PER]
AA______GG________AC__TT__GG
26._PA_150_[PER]
AA______GG________AC__TT__GG
27._PA_150_[PER]
AA______GG________AC__TT__GG
28._PA_150_[PER]
AA______GG________CC__GT__GG
29._GC-01-034-2-11
AACTAGAGGGATCG__ACACAGGTAGCC
30._PA_150_[PER]
AA______GG________AC__GT__CC
31._PA_150_[PER]
AA______GG________AC__GG__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGAGAAAAAACCAGAAAACCAAAAGG
1._PA_150_[PER]_Fld#_173_Plt#_1
ACGGAGAAAAAACCAGAAAACCAAAAGG
2._GC-01-34-2-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
4._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
5._RUQ_1731
AC__CT______GGAG________AATT
6._PA_150_[PER]
AC____TT____GG______________
7._PA_150_[PER]
AC____TT____GG______________
8._PA_150_[PER]
AC____TT____GG______________
9._PA_150_[PER]
AC____TT____GG______________
10._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
11._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
12._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
13._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
14._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
15._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
16._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
17._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
18._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
19._PA_150_[PER]
AA____TT____GT______________
20._PA_150_[PER]
CC____TT____GG______________
21._PA_150_[PER]
CC____TT____GG______________
22._PA_150_[PER]
CC____TT____GG______________
23._PA_150_[PER]
CC____TT____GG______________
24._PA_150_[PER]
AA____TT____GT______________
25._PA_150_[PER]
AA____TT____GT______________
26._PA_150_[PER]
AA____TT____GT______________
27._PA_150_[PER]
AA____TT____GT______________
28._PA_150_[PER]
AA____CT____GG______________
29._GC-01-034-2-11
ACCCCTTTAAAAGGAGTTTTGTTTACCG
30._PA_150_[PER]
AC____TT____GG______________
31._PA_150_[PER]
AC____CT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
1._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
2._GC-01-34-2-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
4._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
5._RUQ_1731
__GG____GG____________AGX_XX_X
6._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
7._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
8._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
9._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
10._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
11._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
12._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
13._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
14._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
15._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
16._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
17._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
18._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
19._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
20._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
21._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
22._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
23._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
24._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
25._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
26._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
27._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
28._PA_150_[PER]
__CCCT______CTGG__AACTAGX_XX_X
29._GC-01-034-2-11
AACGCTCGAGCCCTCCCCATCTAGX_XX_X
30._PA_150_[PER]
__CGCT______CTCC__ATCTAGX_XX_X
31._PA_150_[PER]
__CCCC______CCCG__AACTAAX_XX_X

Input profile: PA_150_[PER] RUQ_1731

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

identical
81 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

88.4 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] GC-01-34-2-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._PA_150_[PER] GC-01-34-2-11

70.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

6._PA_150_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

7._PA_150_[PER]

48.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

8._PA_150_[PER]

48.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

9._PA_150_[PER]

48.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

43.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

41.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

20._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

21._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

22._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

23._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

25._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

26._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

27._PA_150_[PER]

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

28._PA_150_[PER]

38.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

29._PA_150_[PER] GC-01-034-2-11

37.7 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

30._PA_150_[PER]

37.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

31._PA_150_[PER]

37.1 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998