SNP Profiles of BE 10   View Data

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 1234567891011121314
_Input profile
CCCCAAAAAAGGAACCAAGGGGAAAACC
1._BE_10
__________CCAA__AA__________
2._BE_10
__________CCAA__AA__________
3._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
4._BE_10
__________CCAA__AA__________
5._BE_10
__________CCAA__AA__________
6._BE_10
__________CCAA__AA__________
7._BE_10
__________CCAA__AA__________
8._BE_10
__________CCAA__AA__________
9._BE_10
__________CCAA__AA__________
10._BE_10
__________CCAA__AA__________
11._BE_10
__________CCAA__AA__________
12._BE_10
__________CCAA__AA__________
13._BE_10
__________CCAA__AA__________
14._BE_10
__________CCAA__AA__________
15._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
16._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
17._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
18._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
19._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
20._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
21._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
22._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
23._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
24._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
25._GC-08-090-2-13
CCCCAAAATTCCAAGGAACCGGTTTTGG
 1516171819202122232425262728
_Input profile
AAAAGGAAAAGGAAAACCGGCCAAAAGG
1._BE_10
__TTCC__AA__TT__CCCCGGAATT__
2._BE_10
____CC__AA__TT__CCCCGGAATTCC
3._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATT__
4._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
5._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
6._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
7._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
8._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
9._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
10._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
11._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
12._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
13._BE_10
__TTCC__AA__TT__CCCCGGAATTCC
14._BE_10
__TTCC__________CCCCGGAATTCC
15._GC-08-090-2-13
TT__CCTTAAGGTTTTCCCCGGAATTCC
16._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
17._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
18._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
19._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
20._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
21._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
22._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
23._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
24._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
25._GC-08-090-2-13
TTTTCCTTAAGGTTTTCCCCGGAATTCC
 2930313233343536373839404142
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._BE_10
TT____AACCAA__CCGG____TT____
2._BE_10
TT____AACCAA__CCGG____TT____
3._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
4._BE_10
TT____AACCAA__CCGG____TT____
5._BE_10
TT____AACCAA__CCGG____TT____
6._BE_10
TT____AACCAA__CCGG____TT____
7._BE_10
TT____AACCAA__CCGG____TT____
8._BE_10
TT____AACCAA__CCGG____TT____
9._BE_10
TT____AACCAA__CCGG____TT____
10._BE_10
TT____AACCAA__CCGG____TT____
11._BE_10
TT____AACCAA__CCGG____TT____
12._BE_10
TT____AACCAA__CCGG____TT____
13._BE_10
TT____AACCAA__CCGG____TT____
14._BE_10
TT____AACCAA____GG____TT____
15._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
16._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
17._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
18._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
19._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
20._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
21._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
22._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
23._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
24._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
25._GC-08-090-2-13
TTAAGGAACCAAGGCCGGGGAATTGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCCCGGAAAACC
1._BE_10
AA______GG________CC__TT__CC
2._BE_10
AA______GG________CC__TT__CC
3._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
4._BE_10
AA______GG________CC__TT__CC
5._BE_10
AA______GG________CC__TT__CC
6._BE_10
AA______GG________CC__TT__CC
7._BE_10
AA______GG________CC__TT__CC
8._BE_10
AA______GG________CC__TT__CC
9._BE_10
AA______GG________CC__TT__CC
10._BE_10
AA______GG________CC__TT__CC
11._BE_10
AA______GG________CC__TT__CC
12._BE_10
AA______GG________CC__TT__CC
13._BE_10
AA______GG________CC__TT__CC
14._BE_10
AA______GG____________TT__CC
15._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
16._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
17._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
18._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
19._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
20._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
21._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
22._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
23._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
24._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
25._GC-08-090-2-13
AATTGGGGGGTTCC__CCCCGGTTAACC
 5758596061626364656667686970
_Input profile
AAGGAAAAGGAACCGGAAAAAAAAAACC
1._BE_10
AA____TT____GG______________
2._BE_10
AA____TT____GG______________
3._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
4._BE_10
AA____TT____GG______________
5._BE_10
AA____TT____GG______________
6._BE_10
AA____TT____GG______________
7._BE_10
AA____TT____GG______________
8._BE_10
AA____TT____GG______________
9._BE_10
AA____TT____GG______________
10._BE_10
AA____TT____GG______________
11._BE_10
AA____TT____GG______________
12._BE_10
AA____TT____GG______________
13._BE_10
AA____TT____GG______________
14._BE_10
AA____TT____GG______________
15._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
16._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
17._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
18._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
19._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
20._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
21._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
22._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
23._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
24._GC-08-090-2-13
AACCTTTTAAAAGGGGTTTTTTTTAAGG
25._GC-08-090-2-13
AACCTTTTAA__GGGGTTTTTTTTAAGG
 717273747576777879808182  
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._BE_10
__GGCC________GG__AATTGGX_XX_X
2._BE_10
__GGCC______TTGG__AATTGGX_XX_X
3._GC-08-090-2-13
__GGCCCCAACC__GGCCAATTGGX_XX_X
4._BE_10
__GGCC______TTGG__AATTGGX_XX_X
5._BE_10
__GGCC______TTGG__AATTGGX_XX_X
6._BE_10
__GGCC______TTGG__AATTGGX_XX_X
7._BE_10
__GGCC______TTGG__AATTGGX_XX_X
8._BE_10
__GGCC______TTGG__AATTGGX_XX_X
9._BE_10
__GGCC______TTGG__AATTGGX_XX_X
10._BE_10
__GGCC______TTGG__AATTGGX_XX_X
11._BE_10
__GGCC______TTGG__AATTGGX_XX_X
12._BE_10
__GGCC______TTGG__AATTGGX_XX_X
13._BE_10
__GGCC______TTGG__AATTGGX_XX_X
14._BE_10
__GGCC____________AATTGGX_XX_X
15._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
16._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
17._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
18._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
19._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
20._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
21._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
22._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
23._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
24._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X
25._GC-08-090-2-13
__GGCCCCAACCTTGGCCAATTGGX_XX_X

Input profile: BE_10 GC-08-90-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

1._BE_10

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

2._BE_10

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

3._BE_10 GC-08-090-2-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

6._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

7._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

8._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

9._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

10._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

11._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

12._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

13._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

14._BE_10

48.3 %
29 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

15._BE_10 GC-08-090-2-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

17._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._BE_10 GC-08-090-2-13

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998