SNP Profiles of SIAL 505   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAACCAAGGGGAAAACC
1._BE_10___
__________CCAA__AA__________
2._BE_10___
__________CCAA__AA__________
3._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
4._BE_10___
__________CCAA__AA__________
5._BE_10___
__________CCAA__AA__________
6._BE_10___
__________CCAA__AA__________
7._BE_10___
__________CCAA__AA__________
8._BE_10___
__________CCAA__AA__________
9._BE_10___
__________CCAA__AA__________
10._BE_10___
__________CCAA__AA__________
11._BE_10___
__________CCAA__AA__________
12._BE_10___
__________CCAA__AA__________
13._BE_10___
__________CCAA__AA__________
14._BE_10___
__________CCAA__AA__________
15._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
16._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
17._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
18._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
19._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
20._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
21._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
22._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
23._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
24._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
25._BE_10___
CCCCAAAATTCCAAGGAACCGGTTTTGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGAAAAGGAAAACCGGCCAAAAGG
1._BE_10___
__TTCC__AA__TT__CCCCGGAATT__
2._BE_10___
____CC__AA__TT__CCCCGGAATTCC
3._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATT__
4._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
5._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
6._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
7._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
8._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
9._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
10._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
11._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
12._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
13._BE_10___
__TTCC__AA__TT__CCCCGGAATTCC
14._BE_10___
__TTCC__________CCCCGGAATTCC
15._BE_10___
TT__CCTTAAGGTTTTCCCCGGAATTCC
16._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
17._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
18._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
19._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
20._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
21._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
22._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
23._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
24._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
25._BE_10___
TTTTCCTTAAGGTTTTCCCCGGAATTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._BE_10___
TT____AACCAA__CCGG____TT____
2._BE_10___
TT____AACCAA__CCGG____TT____
3._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
4._BE_10___
TT____AACCAA__CCGG____TT____
5._BE_10___
TT____AACCAA__CCGG____TT____
6._BE_10___
TT____AACCAA__CCGG____TT____
7._BE_10___
TT____AACCAA__CCGG____TT____
8._BE_10___
TT____AACCAA__CCGG____TT____
9._BE_10___
TT____AACCAA__CCGG____TT____
10._BE_10___
TT____AACCAA__CCGG____TT____
11._BE_10___
TT____AACCAA__CCGG____TT____
12._BE_10___
TT____AACCAA__CCGG____TT____
13._BE_10___
TT____AACCAA__CCGG____TT____
14._BE_10___
TT____AACCAA____GG____TT____
15._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
16._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
17._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
18._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
19._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
20._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
21._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
22._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
23._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
24._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
25._BE_10___
TTAAGGAACCAAGGCCGGGGAATTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCCCGGAAAACC
1._BE_10___
AA______GG________CC__TT__CC
2._BE_10___
AA______GG________CC__TT__CC
3._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
4._BE_10___
AA______GG________CC__TT__CC
5._BE_10___
AA______GG________CC__TT__CC
6._BE_10___
AA______GG________CC__TT__CC
7._BE_10___
AA______GG________CC__TT__CC
8._BE_10___
AA______GG________CC__TT__CC
9._BE_10___
AA______GG________CC__TT__CC
10._BE_10___
AA______GG________CC__TT__CC
11._BE_10___
AA______GG________CC__TT__CC
12._BE_10___
AA______GG________CC__TT__CC
13._BE_10___
AA______GG________CC__TT__CC
14._BE_10___
AA______GG____________TT__CC
15._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
16._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
17._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
18._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
19._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
20._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
21._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
22._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
23._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
24._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
25._BE_10___
AATTGGGGGGTTCC__CCCCGGTTAACC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAAAAGGAACCGGAAAAAAAAAACC
1._BE_10___
AA____TT____GG______________
2._BE_10___
AA____TT____GG______________
3._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
4._BE_10___
AA____TT____GG______________
5._BE_10___
AA____TT____GG______________
6._BE_10___
AA____TT____GG______________
7._BE_10___
AA____TT____GG______________
8._BE_10___
AA____TT____GG______________
9._BE_10___
AA____TT____GG______________
10._BE_10___
AA____TT____GG______________
11._BE_10___
AA____TT____GG______________
12._BE_10___
AA____TT____GG______________
13._BE_10___
AA____TT____GG______________
14._BE_10___
AA____TT____GG______________
15._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
16._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
17._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
18._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
19._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
20._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
21._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
22._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
23._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
24._BE_10___
AACCTTTTAAAAGGGGTTTTTTTTAAGG
25._BE_10___
AACCTTTTAA__GGGGTTTTTTTTAAGG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._BE_10___
__GGCC________GG__AATTGGX_XX_X
2._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
3._BE_10___
__GGCCCCAACC__GGCCAATTGGX_XX_X
4._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
5._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
6._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
7._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
8._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
9._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
10._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
11._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
12._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
13._BE_10___
__GGCC______TTGG__AATTGGX_XX_X
14._BE_10___
__GGCC____________AATTGGX_XX_X
15._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
16._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
17._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
18._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
19._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
20._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
21._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
22._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
23._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
24._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X
25._BE_10___
__GGCCCCAACCTTGGCCAATTGGX_XX_X

Input profile: BE_10 GC-08-90-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

1._BE_10

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

2._BE_10

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

3._BE_10 GC-08-090-2-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

5._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

6._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

7._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

8._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

9._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

10._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

11._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

12._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

13._BE_10

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

14._BE_10

48.3 %
29 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

15._BE_10 GC-08-090-2-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

17._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._BE_10 GC-08-090-2-13

47.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._BE_10 GC-08-090-2-13

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998