SNP Profiles of CATONGO-01   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAAAAAAGGAACCAAGGAAAAGGCC
1._GC-08-277-8-49
CCAAAAAAAAGGAACCAAGGAAAAAAAA
2._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
3._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
4._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
5._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
6._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
7._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
8._GC-08-109-3-08
CCAAAAAATTCCAAGGAACCAATTCCGG
9._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
10._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
11._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTTTTT
12._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
13._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
14._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
15._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTTTTT
16._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTTTTT
17._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
18._GC-08-277-8-49
CCAAAAAATTCCAAGGAACCAATTCCGG
19._GC-08-278-8-50
CCAAAAAATTCCAAGGAACCAATTCCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
1._GC-08-277-8-49
AAAAGGAAAAGGAAAAACAACCGGAAGG
2._GC-08-277-8-49
CC__CCTTAAGGTTTTAACCGGGGTTCC
3._GC-08-277-8-49
CC__CCTTAA__TTTTAACCGGGGTTCC
4._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
5._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
6._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
7._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
8._GC-08-109-3-08
CCTTCCTTAAGGTTTTAACCGGGGTTCC
9._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
10._GC-08-277-8-49
CC__CCTTAAGGTTTTAACCGGGGTTCC
11._GC-08-277-8-49
TTTTCCTTAAGGTTTTACTTGGGGTTCC
12._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
13._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
14._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
15._GC-08-278-8-50
TTTTCCTTAAGGTTTTACTTGGGGTTCC
16._GC-08-277-8-49
TTTTCCTTAAGGTTTTACTTGGGGTTCC
17._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
18._GC-08-277-8-49
CCTTCCTTAAGGTTTTAACCGGGGTTCC
19._GC-08-278-8-50
CCTTCCTTAAGGTTTTAACCGGGGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGTTTTGGGGAA
1._GC-08-277-8-49
AATTGGAAGGAAGGGGGGTTTTGGGGAA
2._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
3._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
4._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
5._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
6._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
7._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
8._GC-08-109-3-08
TTAAGGAACCAAGGCCGGAATTGGGGAA
9._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
10._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
11._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
12._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
13._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
14._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
15._GC-08-278-8-50
TTAAGGAACCAAGGCCGGAATTGGGGAA
16._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
17._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
18._GC-08-277-8-49
TTAAGGAACCAAGGCCGGAATTGGGGAA
19._GC-08-278-8-50
TTAA__AACCAAGGCCGGAATTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCCCGGAAAACCAA
1._GC-08-277-8-49
AGGGGGGGTTGGAACCCCGGAAAACCAA
2._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
3._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
4._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
5._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
6._GC-08-109-3-08
TTGGGGGGTTCC__CCCCGGTTAACCAA
7._GC-08-109-3-08
TTGGGGGGTTCC__CCCCGGTTAACCAA
8._GC-08-109-3-08
TTGGGGGGTTCC__CCCCGGTTAACCAA
9._GC-08-278-8-50
CTGGGGGGTTCC__CCCCGGTTAACCAA
10._GC-08-277-8-49
TTGGGGGGTTCC__CC__GGTTAACCAA
11._GC-08-277-8-49
CTGGGGGGTTCC__CCCCGGTTAACCAA
12._GC-08-278-8-50
CTGGGGGGTTCC__CCCCGGTTAACCAA
13._GC-08-278-8-50
CTGGGGGGTTCC__CCCCGGTTAACCAA
14._GC-08-278-8-50
CTGGGGGGTTCC__CCCCGGTTAACCAA
15._GC-08-278-8-50
CTGGGGGGTTCC__CCCCGGTTAACCAA
16._GC-08-277-8-49
CTGGGGGGTTCC__CCCCGGTTAACCAA
17._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
18._GC-08-277-8-49
TTGGGGGGTTCC__CCCCGGTTAACCAA
19._GC-08-278-8-50
TTGGGGGGTTCC__CC__GGTTAACCAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAAAAAAACCGG
1._GC-08-277-8-49
GGAAAAGGAACCGGAAAAAAAAAACCGG
2._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAA____
3._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
4._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
5._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
6._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG__
7._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG__
8._GC-08-109-3-08
CCTTTTAAAAGGGGTTTTTTTTAAGG__
9._GC-08-278-8-50
CCTTTTAAAAGGGGTTTT__TTAAGG__
10._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
11._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
12._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG__
13._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG__
14._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG__
15._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG__
16._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
17._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
18._GC-08-277-8-49
CCTTTTAAAAGGGGTTTTTTTTAAGG__
19._GC-08-278-8-50
CCTTTTAAAAGGGGTTTTTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
1._GC-08-277-8-49
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
2._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
3._GC-08-277-8-49
GGCCCCAACC__CCCCAATTGGX_XX_XX_X
4._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
5._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
6._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
7._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
8._GC-08-109-3-08
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
9._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
10._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
11._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
12._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
13._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
14._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
15._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
16._GC-08-277-8-49
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
17._GC-08-277-8-49
GGCCCCAACCTTCCCC__TTGGX_XX_XX_X
18._GC-08-277-8-49
GGCCCC__CCTTCCCCAATTGGX_XX_XX_X
19._GC-08-278-8-50
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X

Input profile: CATONGO_1 GC-08-109-3-8

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

93.8 %
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

49.4 %
77 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

3._CATONGO_1 GC-08-277-8-49

48.7 %
76 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

6._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._CATONGO_1 GC-08-278-8-50

48.1 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

48.1 %
77 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._CATONGO_1 GC-08-278-8-50

46.8 %
77 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998