SNP Profiles of SIC-628   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAAAAAAGGAACCAAGGAAAAGGCC
1._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAAAAA
2._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
3._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
4._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
5._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
6._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
7._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
8._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
9._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
10._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
11._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
12._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
13._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
14._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
15._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
16._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTTTTT
17._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
18._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
19._CATONGO_1___
CCAAAAAATTCCAAGGAACCAATTCCGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
1._CATONGO_1___
AAAAGGAAAAGGAAAAACAACCGGAAGG
2._CATONGO_1___
CC__CCTTAAGGTTTTAACCGGGGTTCC
3._CATONGO_1___
CC__CCTTAA__TTTTAACCGGGGTTCC
4._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
5._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
6._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
7._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
8._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
9._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
10._CATONGO_1___
CC__CCTTAAGGTTTTAACCGGGGTTCC
11._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
12._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
13._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
14._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
15._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
16._CATONGO_1___
TTTTCCTTAAGGTTTTACTTGGGGTTCC
17._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
18._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
19._CATONGO_1___
CCTTCCTTAAGGTTTTAACCGGGGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGTTTTGGGGAA
1._CATONGO_1___
AATTGGAAGGAAGGGGGGTTTTGGGGAA
2._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
3._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
4._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
5._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
6._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
7._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
8._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
9._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
10._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
11._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
12._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
13._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
14._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
15._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
16._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
17._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
18._CATONGO_1___
TTAAGGAACCAAGGCCGGAATTGGGGAA
19._CATONGO_1___
TTAA__AACCAAGGCCGGAATTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCCCGGAAAACCAA
1._CATONGO_1___
AGGGGGGGTTGGAACCCCGGAAAACCAA
2._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
3._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
4._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
5._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
6._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
7._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
8._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
9._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
10._CATONGO_1___
TTGGGGGGTTCC__CC__GGTTAACCAA
11._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
12._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
13._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
14._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
15._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
16._CATONGO_1___
CTGGGGGGTTCC__CCCCGGTTAACCAA
17._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
18._CATONGO_1___
TTGGGGGGTTCC__CCCCGGTTAACCAA
19._CATONGO_1___
TTGGGGGGTTCC__CC__GGTTAACCAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAAAAAAACCGG
1._CATONGO_1___
GGAAAAGGAACCGGAAAAAAAAAACCGG
2._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAA____
3._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
4._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
5._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
6._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
7._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
8._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
9._CATONGO_1___
CCTTTTAAAAGGGGTTTT__TTAAGG__
10._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
11._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
12._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
13._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
14._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
15._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
16._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
17._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
18._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
19._CATONGO_1___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
1._CATONGO_1___
CCGGGGAACCAACCGGAAAAGGX_XX_XX_X
2._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
3._CATONGO_1___
GGCCCCAACC__CCCCAATTGGX_XX_XX_X
4._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
5._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
6._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
7._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
8._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
9._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
10._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
11._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
12._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
13._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
14._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
15._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
16._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X
17._CATONGO_1___
GGCCCCAACCTTCCCC__TTGGX_XX_XX_X
18._CATONGO_1___
GGCCCC__CCTTCCCCAATTGGX_XX_XX_X
19._CATONGO_1___
GGCCCCAACCTTCCCCAATTGGX_XX_XX_X

Input profile: CATONGO_1 GC-08-109-3-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

3._CATONGO_1 GC-08-277-8-49

48.7 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

6._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._CATONGO_1 GC-08-109-3-08

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._CATONGO_1 GC-08-278-8-50

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._CATONGO_1 GC-08-278-8-50

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998