SNP Profiles of GU 335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_171_/C___
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
2._GU_171_/C___
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
3._GU_171_/C___
____________GG______________
4._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
5._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
6._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
7._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
8._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
9._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
10._GU_171_/C___
__________CCGG__AA__________
11._GU_171_/C___
__________CCGG__AA__________
12._GU_171_/C___
__________CCGG__AA__________
13._GU_171_/C___
__________CCGG__AA__________
14._GU_171_/C___
__________CCGG__AA__________
15._GU_171_/C___
__________CCGG__AA__________
16._GU_171_/C___
__________CCGG__AA__________
17._GU_171_/C___
CCCCGGCCTTCCGGGGAACCGGTTCCTT
18._GU_171_/C___
__________CC__GG____GG______
19._GU_171_/C___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAGGAAGGCCAAAAAA
1._GU_171_/C___
AAAAAAAACCGGAAGGAAGGCCAAAAAA
2._GU_171_/C___
AAAAAAAA__GGAAGGAAGGCCAAAAAA
3._GU_171_/C___
__TT____________AA__GG______
4._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
5._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
6._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
7._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
8._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
9._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
10._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
11._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
12._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
13._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
14._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
15._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
16._GU_171_/C___
__TTTT______TT__AACCGGAATTTT
17._GU_171_/C___
TTTTTTTT__GGTTCCAACCGGAATTTT
18._GU_171_/C___
__TT__TT______CCAACCGGAATTTT
19._GU_171_/C___
__TTTT__CC__TT__AACCGGAGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGTTTTGGGGAA
1._GU_171_/C___
GGTTGGAAGGGGGGGGGGTTTTGGGGAA
2._GU_171_/C___
GGTTGGAAGGGGGGGGGGTTTTGGGGAA
3._GU_171_/C___
__________GG__________GG____
4._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
5._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
6._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
7._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
8._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
9._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
10._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
11._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
12._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
13._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
14._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
15._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
16._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
17._GU_171_/C___
CCAAGGAACCGGGGCCGGAATTGGGGAA
18._GU_171_/C___
____GGAACCGG__CC______GGGGAA
19._GU_171_/C___
CC____AACCGG__CCGG__TT____AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_171_/C___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
2._GU_171_/C___
AAGGGGGGTTGGAACCAAGGCCGGCCCC
3._GU_171_/C___
________________________CCCC
4._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
10._GU_171_/C___
______GG________AA__GG__CCCC
11._GU_171_/C___
______GG________AA__GG__CCCC
12._GU_171_/C___
______GG________AA__GG__CCCC
13._GU_171_/C___
______GG________AA__GG__CCCC
14._GU_171_/C___
______GG________AA__GG__CCCC
15._GU_171_/C___
______GG________AA__GG__CCCC
16._GU_171_/C___
______GG________AA__GG__CCCC
17._GU_171_/C___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
18._GU_171_/C___
__________CC____AA__GG__CCCC
19._GU_171_/C___
______AG________AA__GG__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAAACAAAAAACCGG
1._GU_171_/C___
GGGGGGGGAACCAAAAACAAAAAACCGG
2._GU_171_/C___
GGGGGGGGAACCAAAAACAAAAAACCGG
3._GU_171_/C___
__CC______GGAA________AACC__
4._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
5._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
6._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
7._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
8._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
9._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
10._GU_171_/C___
____CC____GG________________
11._GU_171_/C___
____CC____GG________________
12._GU_171_/C___
____CC____GG________________
13._GU_171_/C___
____CC____GG________________
14._GU_171_/C___
____CC____GG________________
15._GU_171_/C___
____CC____GG________________
16._GU_171_/C___
____CC____GG________________
17._GU_171_/C___
CCCCCCAAAAGGAATTGTTTTTAAGG__
18._GU_171_/C___
__CCCC____GGAATT____TTAA____
19._GU_171_/C___
____CC____GG________________
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_171_/C___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GU_171_/C___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
3._GU_171_/C___
GG____GG____________AAX_XX_XX_X
4._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
5._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
6._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
7._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
8._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
9._GU_171_/C___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
10._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
11._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
12._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
13._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
14._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
15._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
16._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X
17._GU_171_/C___
GGCCCCGG__CCGGCCAATTAAX_XX_XX_X
18._GU_171_/C___
GGCC__GGCC__________AAX_XX_XX_X
19._GU_171_/C___
GGCC______CCGG__AATTAAX_XX_XX_X

Input profile: GU_171_/C GC-01-94-5-11

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

1._GU_171_/C RUQ_195

identical
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_171_/C GC-01-94-5-11

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._GU_171_/C RUQ_195

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

8._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

11._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016

12._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

13._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

14._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

15._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

16._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

17._GU_171_/C GC-01-094-5-11

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._GU_171_/C RUQ_195

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_171_/C RUQ_195

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998