SNP Profiles of GU 310 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_136_/H___
____________GG______________
2._GU_136_/H___
__________CCGG__AA__________
3._GU_136_/H___
__________CCGG__AA__________
4._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
9._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
10._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
11._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
12._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
13._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
14._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
15._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
16._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
17._GU_136_/H___
__________CCGG__AA__________
18._GU_136_/H___
__________CCGG__AA__________
19._GU_136_/H___
__________CCGG__AA__________
20._GU_136_/H___
__________CCGG__AA__________
21._GU_136_/H___
__________CCGG__AA__________
22._GU_136_/H___
__________CCGG__AA__________
23._GU_136_/H___
__________CCGG__AA__________
24._GU_136_/H___
__________CCGG__AA__________
25._GU_136_/H___
__________CCGG__AA__________
26._GU_136_/H___
__________CCGG__AA__________
27._GU_136_/H___
__________CCGG__AA__________
28._GU_136_/H___
__________CCGG__AA__________
29._GU_136_/H___
__________CCGG__AA__________
30._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
31._GU_136_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
32._GU_136_/H___
__________CCGG__AA__________
33._GU_136_/H___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAACGGAAGGAAGGCCGGAAAA
1._GU_136_/H___
__TT____________AA__GG______
2._GU_136_/H___
____TT______TT__AACCGGGGTTTT
3._GU_136_/H___
__TTTT______TT__AACCGGGG__TT
4._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGG__TT
5._GU_136_/H___
TT__TTTT__GGTTCCAACCGGGGTTTT
6._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
7._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
8._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
9._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
10._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
11._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
12._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
13._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
14._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
15._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
16._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
17._GU_136_/H___
__TTTT__CC__TT__AACCGGGGTTTT
18._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
19._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
20._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
21._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
22._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
23._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
24._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
25._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
26._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
27._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
28._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
29._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
30._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
31._GU_136_/H___
TTTTTTTT__GGTTCCAACCGGGGTTTT
32._GU_136_/H___
__TTTT______TT__AACCGGGGTTTT
33._GU_136_/H___
__TT__TT______CCAACCGGGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGTTATGGGGAA
1._GU_136_/H___
__________GG__________GG____
2._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
3._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
4._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
5._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
6._GU_136_/H___
CC__GGAACCGGGGCCGGAAATGGGGAA
7._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
8._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
9._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
10._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
11._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
12._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
13._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
14._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
15._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
16._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
17._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
18._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
19._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
20._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
21._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
22._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
23._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
24._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
25._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
26._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
27._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
28._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
29._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
30._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
31._GU_136_/H___
CCAAGGAACCGGGGCCGGAAATGGGGAA
32._GU_136_/H___
CC____AACCGG__CCGG__AT____AA
33._GU_136_/H___
____GGAACCGG__CC______GGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_136_/H___
________________AA______CCCC
2._GU_136_/H___
______GG________AA__GG__CCCC
3._GU_136_/H___
______GG________AA__GG__CCCC
4._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
10._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
11._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
12._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
13._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
14._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
15._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
16._GU_136_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
17._GU_136_/H___
______GG________AA__GG__CCCC
18._GU_136_/H___
______GG________AA__GG__CCCC
19._GU_136_/H___
______GG________AA__GG__CCCC
20._GU_136_/H___
______GG________AA__GG__CCCC
21._GU_136_/H___
______GG________AA__GG__CCCC
22._GU_136_/H___
______GG________AA__GG__CCCC
23._GU_136_/H___
______GG________AA__GG__CCCC
24._GU_136_/H___
______GG________AA__GG__CCCC
25._GU_136_/H___
______GG________AA__GG__CCCC
26._GU_136_/H___
______GG________AA__GG__CCCC
27._GU_136_/H___
______GG________AA__GG__CCCC
28._GU_136_/H___
______GG________AA__GG__CCCC
29._GU_136_/H___
______GG________AA__GG__CCCC
30._GU_136_/H___
TTGGGG__TTCC__CCAAGGGGGGCCCC
31._GU_136_/H___
TTGG__GGTTCC__CCAAGGGGGGCCCC
32._GU_136_/H___
________________AA__GG__CCCC
33._GU_136_/H___
__________CC____AA__GG__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_136_/H___
__CC______GGAA________AACC__
2._GU_136_/H___
____CC____GG________________
3._GU_136_/H___
____CC____GG________________
4._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
5._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
6._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
7._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
8._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
9._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
10._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
11._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
12._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
13._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
14._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
15._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
16._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
17._GU_136_/H___
____CC____GG________________
18._GU_136_/H___
____CC____GG________________
19._GU_136_/H___
____CC____GG________________
20._GU_136_/H___
____CC____GG________________
21._GU_136_/H___
____CC____GG________________
22._GU_136_/H___
____CC____GG________________
23._GU_136_/H___
____CC____GG________________
24._GU_136_/H___
____CC____GG________________
25._GU_136_/H___
____CC____GG________________
26._GU_136_/H___
____CC____GG________________
27._GU_136_/H___
____CC____GG________________
28._GU_136_/H___
____CC____GG________________
29._GU_136_/H___
____CC____GG________________
30._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
31._GU_136_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
32._GU_136_/H___
____CC____GG________________
33._GU_136_/H___
__CCCC____GGAATT____TTAA____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._GU_136_/H___
GG____GG____________AAX_XX_XX_X
2._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
3._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
4._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
5._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
6._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
7._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
8._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
9._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
10._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
11._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
12._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
13._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
14._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
15._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
16._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
17._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
18._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
19._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
20._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
21._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
22._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
23._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
24._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
25._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
26._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
27._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
28._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
29._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
30._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
31._GU_136_/H___
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
32._GU_136_/H___
GGCC______CCGG__AACCAAX_XX_XX_X
33._GU_136_/H___
GGCC____CC__________AAX_XX_XX_X

Input profile: GU_136_/H GC-03-19-2-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_136_/H RUQ_221

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

3._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

4._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_136_/H RUQ_221

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

19._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

20._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

21._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

22._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

23._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

24._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

25._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

26._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

27._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

28._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

29._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

30._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._GU_136_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

33._GU_136_/H RUQ_221

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998