SNP Profiles of GU-136H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_221
____________GG______________
2._GU_136_/H
__________CCGG__AA__________
3._GU_136_/H
__________CCGG__AA__________
4._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
9._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
10._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
11._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
12._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
13._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
14._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
15._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
16._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
17._RUQ_221
__________CCGG__AA__________
18._GU_136_/H
__________CCGG__AA__________
19._GU_136_/H
__________CCGG__AA__________
20._GU_136_/H
__________CCGG__AA__________
21._GU_136_/H
__________CCGG__AA__________
22._GU_136_/H
__________CCGG__AA__________
23._GU_136_/H
__________CCGG__AA__________
24._GU_136_/H
__________CCGG__AA__________
25._GU_136_/H
__________CCGG__AA__________
26._GU_136_/H
__________CCGG__AA__________
27._GU_136_/H
__________CCGG__AA__________
28._GU_136_/H
__________CCGG__AA__________
29._GU_136_/H
__________CCGG__AA__________
30._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
31._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
32._GU_136_/H
__________CCGG__AA__________
33._RUQ_221
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAACGGAAGGAAGGCCGGAAAA
1._RUQ_221
__TT____________AA__GG______
2._GU_136_/H
____TT______TT__AACCGGGGTTTT
3._GU_136_/H
__TTTT______TT__AACCGGGG__TT
4._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGG__TT
5._GC-03-019-2-08
TT__TTTT__GGTTCCAACCGGGGTTTT
6._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
7._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
8._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
9._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
10._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
11._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
12._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
13._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
14._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
15._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
16._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
17._RUQ_221
__TTTT__CC__TT__AACCGGGGTTTT
18._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
19._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
20._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
21._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
22._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
23._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
24._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
25._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
26._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
27._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
28._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
29._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
30._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
31._GC-03-019-2-08
TTTTTTTT__GGTTCCAACCGGGGTTTT
32._GU_136_/H
__TTTT______TT__AACCGGGGTTTT
33._RUQ_221
__TT__TT______CCAACCGGGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGTTATGGGGAA
1._RUQ_221
__________GG__________GG____
2._GU_136_/H
CC____AACCGG__CCGG__AT____AA
3._GU_136_/H
CC____AACCGG__CCGG__AT____AA
4._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
5._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
6._GC-03-019-2-08
CC__GGAACCGGGGCCGGAAATGGGGAA
7._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
8._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
9._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
10._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
11._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
12._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
13._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
14._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
15._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
16._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
17._RUQ_221
CC____AACCGG__CCGG__AT____AA
18._GU_136_/H
CC____AACCGG__CCGG__AT____AA
19._GU_136_/H
CC____AACCGG__CCGG__AT____AA
20._GU_136_/H
CC____AACCGG__CCGG__AT____AA
21._GU_136_/H
CC____AACCGG__CCGG__AT____AA
22._GU_136_/H
CC____AACCGG__CCGG__AT____AA
23._GU_136_/H
CC____AACCGG__CCGG__AT____AA
24._GU_136_/H
CC____AACCGG__CCGG__AT____AA
25._GU_136_/H
CC____AACCGG__CCGG__AT____AA
26._GU_136_/H
CC____AACCGG__CCGG__AT____AA
27._GU_136_/H
CC____AACCGG__CCGG__AT____AA
28._GU_136_/H
CC____AACCGG__CCGG__AT____AA
29._GU_136_/H
CC____AACCGG__CCGG__AT____AA
30._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
31._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
32._GU_136_/H
CC____AACCGG__CCGG__AT____AA
33._RUQ_221
____GGAACCGG__CC______GGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_221
________________AA______CCCC
2._GU_136_/H
______GG________AA__GG__CCCC
3._GU_136_/H
______GG________AA__GG__CCCC
4._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
10._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
11._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
12._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
13._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
14._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
15._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
16._GC-03-019-2-08
TTGGGGGGTTCC__CCAAGGGGGGCCCC
17._RUQ_221
______GG________AA__GG__CCCC
18._GU_136_/H
______GG________AA__GG__CCCC
19._GU_136_/H
______GG________AA__GG__CCCC
20._GU_136_/H
______GG________AA__GG__CCCC
21._GU_136_/H
______GG________AA__GG__CCCC
22._GU_136_/H
______GG________AA__GG__CCCC
23._GU_136_/H
______GG________AA__GG__CCCC
24._GU_136_/H
______GG________AA__GG__CCCC
25._GU_136_/H
______GG________AA__GG__CCCC
26._GU_136_/H
______GG________AA__GG__CCCC
27._GU_136_/H
______GG________AA__GG__CCCC
28._GU_136_/H
______GG________AA__GG__CCCC
29._GU_136_/H
______GG________AA__GG__CCCC
30._GC-03-019-2-08
TTGGGG__TTCC__CCAAGGGGGGCCCC
31._GC-03-019-2-08
TTGG__GGTTCC__CCAAGGGGGGCCCC
32._GU_136_/H
________________AA__GG__CCCC
33._RUQ_221
__________CC____AA__GG__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._RUQ_221
__CC______GGAA________AACC__
2._GU_136_/H
____CC____GG________________
3._GU_136_/H
____CC____GG________________
4._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
5._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
6._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
7._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
8._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
9._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
10._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
11._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
12._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
13._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
14._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
15._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
16._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
17._RUQ_221
____CC____GG________________
18._GU_136_/H
____CC____GG________________
19._GU_136_/H
____CC____GG________________
20._GU_136_/H
____CC____GG________________
21._GU_136_/H
____CC____GG________________
22._GU_136_/H
____CC____GG________________
23._GU_136_/H
____CC____GG________________
24._GU_136_/H
____CC____GG________________
25._GU_136_/H
____CC____GG________________
26._GU_136_/H
____CC____GG________________
27._GU_136_/H
____CC____GG________________
28._GU_136_/H
____CC____GG________________
29._GU_136_/H
____CC____GG________________
30._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
31._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG__
32._GU_136_/H
____CC____GG________________
33._RUQ_221
__CCCC____GGAATT____TTAA____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._RUQ_221
GG____GG____________AAX_XX_XX_X
2._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
3._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
4._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
5._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
6._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
7._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
8._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
9._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
10._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
11._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
12._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
13._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
14._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
15._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
16._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
17._RUQ_221
GGCC______CCGG__AACCAAX_XX_XX_X
18._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
19._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
20._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
21._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
22._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
23._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
24._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
25._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
26._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
27._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
28._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
29._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
30._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
31._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
32._GU_136_/H
GGCC______CCGG__AACCAAX_XX_XX_X
33._RUQ_221
GGCC____CC__________AAX_XX_XX_X

Input profile: GU_136_/H GC-03-19-2-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_136_/H RUQ_221

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

3._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

4._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_136_/H RUQ_221

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

19._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

20._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

21._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

22._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

23._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

24._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

25._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

26._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

27._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

28._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

29._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

30._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._GU_136_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

33._GU_136_/H RUQ_221

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998