SNP Profiles of GU 147/H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_147_/H___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._GU_147_/H___
____________GG______________
3._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
4._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
9._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
10._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
11._GU_147_/H___
__________CCGG__AA__________
12._GU_147_/H___
__________CCGG__AA__________
13._GU_147_/H___
__________CCGG__AA__________
14._GU_147_/H___
__________CCGG__AA__________
15._GU_147_/H___
__________CCGG__AA__________
16._GU_147_/H___
__________CCGG__AA__________
17._GU_147_/H___
__________CCGG__AA__________
18._GU_147_/H___
__________CCGG__AA__________
19._GU_147_/H___
__________CCGG__AA__________
20._GU_147_/H___
CCAAGGCCTTCCGGGGAACCGGTTCCTT
21._GU_147_/H___
__________CCGG__AA__________
22._GU_147_/H___
__________CC__GG____GG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._GU_147_/H___
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
2._GU_147_/H___
__TT__________AA__CC________
3._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
4._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
5._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
6._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
7._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
8._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
9._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
10._GU_147_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
11._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
12._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
13._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
14._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
15._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
16._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
17._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
18._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
19._GU_147_/H___
__TTTT____TT__AACCCCGGTTTTCC
20._GU_147_/H___
TTTTTTTTGGTTCC__CCCCGGTTTTCC
21._GU_147_/H___
__TTTT____TT____CCCCGGTTTTCC
22._GU_147_/H___
__TT__TT____CCAACCCCGGTTTT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGTTATGGGGAAAG
1._GU_147_/H___
TTGGAAGGGGGGGGGGTTATGGGGAAAA
2._GU_147_/H___
________GG__________GG______
3._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
4._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
5._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
6._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
7._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
8._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
9._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
10._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
11._GU_147_/H___
____AACCGG__CCGG__AT____AA__
12._GU_147_/H___
____AACCGG__CCGG__AT____AA__
13._GU_147_/H___
____AACCGG__CCGG__AT____AA__
14._GU_147_/H___
____AACCGG__CCGG__AT____AA__
15._GU_147_/H___
____AACCGG__CCGG__AT____AA__
16._GU_147_/H___
____AACCGG__CCGG__AT____AA__
17._GU_147_/H___
____AACCGG__CCGG__AT____AA__
18._GU_147_/H___
____AACCGG__CCGG__AT____AA__
19._GU_147_/H___
____AACCGG__CCGG__AT____AA__
20._GU_147_/H___
AAGGAACCGGGGCCGGAAATGGGGAACT
21._GU_147_/H___
____AACCGG__CCGG__AT____AA__
22._GU_147_/H___
__GGAACCGG__CC______GGGGAA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGGGGGTTGGAACCAAGGCCGGCCAAGG
1._GU_147_/H___
GGGGGGTTGGAACCAAGGCCGGCCCCGG
2._GU_147_/H___
______________AA______CCAA__
3._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
4._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
5._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
6._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
7._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
8._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
9._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
10._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
11._GU_147_/H___
____GG________AA__GG__CCAA__
12._GU_147_/H___
____GG________AA__GG__CCAA__
13._GU_147_/H___
____GG________AA__GG__CCAA__
14._GU_147_/H___
____GG________AA__GG__CCAA__
15._GU_147_/H___
____GG________AA__GG__CCAA__
16._GU_147_/H___
____GG________AA__GG__CCAA__
17._GU_147_/H___
____GG________AA__GG__CCAA__
18._GU_147_/H___
____GG________AA__GG__CCAA__
19._GU_147_/H___
____GG________AA__GG__CCAA__
20._GU_147_/H___
GGGGGGTTCC__CCAAGGGGGGCCAACC
21._GU_147_/H___
____GG________AA__GG__CCAA__
22._GU_147_/H___
________CC____AA__GG__CCAA__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAGGGAACCAAAACCAAAAAACCGGCC
1._GU_147_/H___
GGGGAGAACCAAAAACAAAAAACCGGCC
2._GU_147_/H___
CC______GGAA________AACT__GG
3._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
4._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
5._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
6._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
7._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
8._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
9._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
10._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
11._GU_147_/H___
__CT____GG________________GG
12._GU_147_/H___
__CT____GG________________GG
13._GU_147_/H___
__CT____GG________________GG
14._GU_147_/H___
__CT____GG________________GG
15._GU_147_/H___
__CT____GG________________GG
16._GU_147_/H___
__CT____GG________________GG
17._GU_147_/H___
__CT____GG________________GG
18._GU_147_/H___
__CT____GG________________GG
19._GU_147_/H___
__CT____GG________________GG
20._GU_147_/H___
CCCTAAAAGGAATTGGTTTTAAGG__GG
21._GU_147_/H___
__CT____GG________________GG
22._GU_147_/H___
CCCT____GGAATT____TTAA____GG
 71 72 73 74 75 76 77 78 79 80     
_Input profile
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
1._GU_147_/H___
GGGGGGCCGGGGGGAAAGAGX_XX_XX_XX_X
2._GU_147_/H___
____GG____________GGX_XX_XX_XX_X
3._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
4._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
5._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
6._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
7._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
8._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
9._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
10._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
11._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
12._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
13._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
14._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
15._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
16._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
17._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
18._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
19._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
20._GU_147_/H___
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
21._GU_147_/H___
CC______CCGG__AACCGGX_XX_XX_XX_X
22._GU_147_/H___
CC____CC__________GGX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-80-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_147_/H RUQ_222

91.9 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_147_/H RUQ_222

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

9._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

12._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016

13._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

14._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

15._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

16._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

17._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

18._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

19._GU_147_/H RUQ_222

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H GC-01-080-4-16

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._GU_147_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

22._GU_147_/H RUQ_222

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998