SNP Profiles of GU-147H View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_222	CC	AA	AA	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
2._RUQ_222	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
3._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
4._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
5._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
6._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
7._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
8._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
9._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
10._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
11._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
12._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
13._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
14._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
15._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
16._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
17._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
18._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
19._RUQ_222	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
20._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
21._GU_147_/H	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
22._RUQ_222	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AA	GG	GG	GG	AA	AA	GG
1._RUQ_222	AA	AA	AA	AA	GG	AA	GG	AA	GG	CC	AG	AA	AA	GG
2._RUQ_222	__	TT	__	__	__	__	__	AA	__	CC	__	__	__	__
3._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
4._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
5._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
6._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
7._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
8._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
9._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
10._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
11._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
12._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
13._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
14._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
15._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
16._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
17._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
18._GU_147_/H	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
19._RUQ_222	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
20._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	__	CC	CC	GG	TT	TT	CC
21._GU_147_/H	__	TT	TT	__	__	TT	__	__	CC	CC	GG	TT	TT	CC
22._RUQ_222	__	TT	__	TT	__	__	CC	AA	CC	CC	GG	TT	TT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	GG	GG	GG	GG	GG	TT	AT	GG	GG	AA	AG
1._RUQ_222	TT	GG	AA	GG	GG	GG	GG	GG	TT	AT	GG	GG	AA	AA
2._RUQ_222	__	__	__	__	GG	__	__	__	__	__	GG	__	__	__
3._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
4._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
5._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
6._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
7._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
8._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
9._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
10._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
11._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
12._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
13._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
14._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
15._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
16._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
17._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
18._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
19._RUQ_222	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
20._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
21._GU_147_/H	__	__	AA	CC	GG	__	CC	GG	__	AT	__	__	AA	__
22._RUQ_222	__	GG	AA	CC	GG	__	CC	__	__	__	GG	GG	AA	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	AA	GG
1._RUQ_222	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC	GG
2._RUQ_222	__	__	__	__	__	__	__	AA	__	__	__	CC	AA	__
3._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
4._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
5._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
6._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
7._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
8._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
9._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
10._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
11._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
12._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
13._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
14._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
15._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
16._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
17._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
18._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
19._RUQ_222	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
20._GC-01-080-4-16	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AA	CC
21._GU_147_/H	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AA	__
22._RUQ_222	__	__	__	__	CC	__	__	AA	__	GG	__	CC	AA	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AG	GG	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG	CC
1._RUQ_222	GG	GG	AG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG	CC
2._RUQ_222	CC	__	__	__	GG	AA	__	__	__	__	AA	CT	__	GG
3._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
4._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
5._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
6._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
7._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
8._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
9._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
10._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
11._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
12._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
13._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
14._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
15._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
16._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
17._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
18._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
19._RUQ_222	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
20._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
21._GU_147_/H	__	CT	__	__	GG	__	__	__	__	__	__	__	__	GG
22._RUQ_222	CC	CT	__	__	GG	AA	TT	__	__	TT	AA	__	__	GG

	71	72	73	74	75	76	77	78	79	80
_Input profile	GG	GG	GG	CC	GG	GG	GG	AA	GG	GG	X_X	X_X	X_X	X_X
1._RUQ_222	GG	GG	GG	CC	GG	GG	GG	AA	AG	AG	X_X	X_X	X_X	X_X
2._RUQ_222	__	__	GG	__	__	__	__	__	__	GG	X_X	X_X	X_X	X_X
3._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
4._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
5._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
6._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
7._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
8._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
9._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
10._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
11._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
12._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
13._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
14._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
15._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
16._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
17._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
18._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
19._RUQ_222	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
20._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
21._GU_147_/H	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X	X_X
22._RUQ_222	CC	__	__	CC	__	__	__	__	__	GG	X_X	X_X	X_X	X_X

Input profile: GU_147_/H GC-01-80-4-16

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 16, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

1._GU_147_/H RUQ_222

91.9 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._GU_147_/H RUQ_222

67.6 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.997

3._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP4

4._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

5._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

6._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

7._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

9._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

11._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 5 > FP

Dapeng Zhang, 2016

12._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 2

Dapeng Zhang, 2016

13._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 7

Dapeng Zhang, 2016

14._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 12

Dapeng Zhang, 2016

15._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 13

Dapeng Zhang, 2016

16._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 16

Dapeng Zhang, 2016

17._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 14 > F

Dapeng Zhang, 2016

18._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 15 > F

Dapeng Zhang, 2016

19._GU_147_/H RUQ_222

47.1 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._GU_147_/H GC-01-080-4-16

46.8 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

21._GU_147_/H

45.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 1 > FP

Dapeng Zhang, 2016

22._GU_147_/H RUQ_222

44.4 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP316	38	TcSNP32	39	TcSNP329	40	TcSNP364
41	TcSNP372	42	TcSNP413	43	TcSNP418	44	TcSNP42	45	TcSNP429
46	TcSNP430	47	TcSNP448	48	TcSNP497	49	TcSNP521	50	TcSNP529
51	TcSNP547	52	TcSNP560	53	TcSNP561	54	TcSNP577	55	TcSNP591
56	TcSNP60	57	TcSNP602	58	TcSNP619	59	TcSNP653	60	TcSNP689
61	TcSNP723	62	TcSNP731	63	TcSNP75	64	TcSNP751	65	TcSNP776
66	TcSNP799	67	TcSNP823	68	TcSNP836	69	TcSNP860	70	TcSNP872
71	TcSNP891	72	TcSNP894	73	TcSNP899	74	TcSNP90	75	TcSNP917
76	TcSNP929	77	TcSNP944	78	TcSNP953	79	TcSNP994	80	TcSNP998