SNP Profiles of GU 353   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAACCAAGGGGCCAAGGGGAAGGAA
1._GU_154_/C___
____________GG__AA__________
2._GU_154_/C___
__________CCGG__AA__________
3._GU_154_/C___
__________CCGG__AA__________
4._GU_154_/C___
__________CCGG__AA__________
5._GU_154_/C___
__________CCGG__AA__________
6._GU_154_/C___
__________CCGG__AA__________
7._GU_154_/C___
__________CCGG__AA__________
8._GU_154_/C___
__________CCGG__AA__________
9._GU_154_/C___
__________CCGG__AA__________
10._GU_154_/C___
__________CCGG__AA__________
11._GU_154_/C___
__________CCGG__AA__________
12._GU_154_/C___
__________CCGG__AA__________
13._GU_154_/C___
__________CCGG__AA__________
14._GU_154_/C___
__________CCGG__AA__________
15._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
16._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
17._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
18._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
19._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
20._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
21._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
22._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
23._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
24._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
25._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
26._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
27._GU_154_/C___
CCACAACCTT__GGGGAACCGGTTCCTT
28._GU_154_/C___
CCACAACCTTCCGGGGAACCGGTTCCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
2._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
3._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
4._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
5._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
6._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
7._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
8._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
9._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
10._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
11._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
12._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
13._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
14._GU_154_/C___
__TTTT____TT__AACCCGGGTTTTCC
15._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
16._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
18._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
24._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
25._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
27._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
28._GU_154_/C___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTATGGGGAA
1._GU_154_/C___
____AACCGG__CCGG____AT____AA
2._GU_154_/C___
____AACCGG__CCGG____AT____AA
3._GU_154_/C___
____AACCGG__CCGG____AT____AA
4._GU_154_/C___
____AACCGG__CCGG____AT____AA
5._GU_154_/C___
____AACCGG__CCGG____AT____AA
6._GU_154_/C___
____AACCGG__CCGG____AT____AA
7._GU_154_/C___
____AACCGG__CCGG____AT____AA
8._GU_154_/C___
____AACCGG__CCGG____AT____AA
9._GU_154_/C___
____AACCGG__CCGG____AT____AA
10._GU_154_/C___
____AACCGG__CCGG____AT____AA
11._GU_154_/C___
____AACCGG__CCGG____AT____AA
12._GU_154_/C___
____AACCGG__CCGG____AT____AA
13._GU_154_/C___
______CCGG__CCGG____AT____AA
14._GU_154_/C___
____AACCGG__CCGG____AT______
15._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
16._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
17._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
18._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
19._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
20._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
21._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
22._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
23._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
24._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
25._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGG__
26._GU_154_/C___
AAGG__CCGGGGCCGGGGAAATGGGGAA
27._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
28._GU_154_/C___
AAGGAACCGGGGCCGGGGAAATGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCAC
1._GU_154_/C___
______GG________AA__GG__CCAC
2._GU_154_/C___
______GG________AA__GG__CCAC
3._GU_154_/C___
______GG________AA__GG__CCAC
4._GU_154_/C___
______GG________AA__GG__CCAC
5._GU_154_/C___
______GG________AA__GG__CCAC
6._GU_154_/C___
______GG________AA__GG__CCAC
7._GU_154_/C___
______GG________AA__GG__CCAC
8._GU_154_/C___
______GG________AA__GG__CCAC
9._GU_154_/C___
______GG________AA__GG__CCAC
10._GU_154_/C___
______GG________AA__GG__CCAC
11._GU_154_/C___
______GG________AA__GG__CCAC
12._GU_154_/C___
______GG________AA__GG__CCAC
13._GU_154_/C___
______GG________AA__GG__CCAC
14._GU_154_/C___
______GG________AA__GG__CCAC
15._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
16._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
17._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
18._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
19._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
20._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
21._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
22._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
23._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
24._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
25._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
26._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
27._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGGGGCCAC
28._GU_154_/C___
CTGGGGGGTTCC__CCAAGGGG__CCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_154_/C___
____CC____GG________________
2._GU_154_/C___
____CC____GG________________
3._GU_154_/C___
____CC____GG________________
4._GU_154_/C___
____CC____GG________________
5._GU_154_/C___
____CC____GG________________
6._GU_154_/C___
____CC____GG________________
7._GU_154_/C___
____CC____GG________________
8._GU_154_/C___
____CC____GG________________
9._GU_154_/C___
____CC____GG________________
10._GU_154_/C___
____CC____GG________________
11._GU_154_/C___
____CC____GG________________
12._GU_154_/C___
____CC____GG________________
13._GU_154_/C___
____CC____GG________________
14._GU_154_/C___
____CC____GG________________
15._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
16._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
17._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
18._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
19._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
20._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
21._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
22._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
23._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
24._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
25._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
26._GU_154_/C___
CCCCCCAAAAGGAATTGGTTTTAAGG__
27._GU_154_/C___
CCCCCCAA__GGAATTGGTTTTAAGG__
28._GU_154_/C___
CCCCCCAA__GGAATTGGTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
1._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
2._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
3._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
4._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
5._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
6._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
7._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
8._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
9._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
10._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
11._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
12._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
13._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
14._GU_154_/C___
GGCC______CCGG__AACCAGX_XX_XX_X
15._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
16._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
17._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
18._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
19._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
20._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
21._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
22._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
23._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
24._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
25._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
26._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
27._GU_154_/C___
GGCCCCGG__CCGGCCAACCAGX_XX_XX_X
28._GU_154_/C___
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X

Input profile: GU_154_/C GC-01-78-4-14

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_154_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

2._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

3._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

4._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

5._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

6._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

7._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

8._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

9._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

10._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

11._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

12._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

13._GU_154_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

14._GU_154_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

15._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

17._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

18._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

20._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

21._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

27._GU_154_/C GC-01-078-4-14

47.4 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._GU_154_/C GC-01-078-4-14

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998