SNP Profiles of GU 335   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAACCAAGGGGCCAAGGGGAAGGAA
1._GU_168_/H___
____________GG______________
2._GU_168_/H___
__________CCGG__AA__________
3._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
4._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
5._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
6._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
7._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
8._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
9._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
10._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
11._GU_168_/H___
__________CCGG__AA__________
12._GU_168_/H___
__________CCGG__AA__________
13._GU_168_/H___
__________CCGG__AA__________
14._GU_168_/H___
__________CCGG__AA__________
15._GU_168_/H___
__________CCGG__AA__________
16._GU_168_/H___
__________CCGG__AA__________
17._GU_168_/H___
__________CCGG__AA__________
18._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
19._GU_168_/H___
CCCCAACCTTCCGGGGAACCGGTTCCTT
20._GU_168_/H___
__________CCGG__AA__________
21._GU_168_/H___
__________CCGG__AA__________
22._GU_168_/H___
__________CC__GG____GG______
23._GU_168_/H___
__________CCGG__AA__________
24._GU_168_/H___
CCAAAAAATTCCAAGGAACCAATTTTGG
25._GU_168_/H___
__________CCAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._GU_168_/H___
__TT__________AA__GG________
2._GU_168_/H___
__TTTT____TT__AACCCCGGTT__CC
3._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTT__CC
4._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
5._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
6._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
7._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
8._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
9._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
10._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
11._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
12._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
13._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
14._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
15._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
16._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
17._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
18._GU_168_/H___
TTTTTTTTGGTTCCAACCCCGGTTTTCC
19._GU_168_/H___
TTTTTTTTGGTTCC__CCCCGGTTTTCC
20._GU_168_/H___
__TTTT____TT____CCCCGGTTTTCC
21._GU_168_/H___
__TTTT____TT__AACCCCGGTTTTCC
22._GU_168_/H___
__TT__TT____CCAACCGGAGTTTT__
23._GU_168_/H___
__TTTT____TT__AACCGGAGTTTTCC
24._GU_168_/H___
CTTTCCTTGGTTTTACCTGGAATTCCTT
25._GU_168_/H___
__TTCC____TT__ACCTGGAATTCCTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._GU_168_/H___
________GG____________GG____
2._GU_168_/H___
____AACCGG__CCGG____TT____AA
3._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
4._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
5._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
6._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
7._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
8._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
9._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
10._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
11._GU_168_/H___
____AACCGG__CCGG____TT____AA
12._GU_168_/H___
____AACCGG__CCGG____TT____AA
13._GU_168_/H___
____AACCGG__CCGG____TT____AA
14._GU_168_/H___
____AACCGG__CCGG____TT____AA
15._GU_168_/H___
____AACCGG__CCGG____TT____AA
16._GU_168_/H___
____AACCGG__CCGG____TT____AA
17._GU_168_/H___
____AACCGG__CCGG____TT____AA
18._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
19._GU_168_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
20._GU_168_/H___
____AACCGG__CCGG____TT____AA
21._GU_168_/H___
____AACCGG__CCGG____TT____AA
22._GU_168_/H___
__GGAACCGG__CC________GGGGAA
23._GU_168_/H___
____AACCGG__CCGG____AT____AA
24._GU_168_/H___
AAGGAACCAAGGCCGGGGAATTGGGGAA
25._GU_168_/H___
____AACCAA__CCGG____TT____AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_168_/H___
________________AA______CCCC
2._GU_168_/H___
______GG________AA__GG__CCCC
3._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
4._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
10._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
11._GU_168_/H___
______GG________AA__GG__CCCC
12._GU_168_/H___
______GG________AA__GG__CCCC
13._GU_168_/H___
______GG________AA__GG__CCCC
14._GU_168_/H___
______GG________AA__GG__CCCC
15._GU_168_/H___
______GG________AA__GG__CCCC
16._GU_168_/H___
______GG________AA__GG__CCCC
17._GU_168_/H___
______GG________AA__GG__CCCC
18._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGG__CC
19._GU_168_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCCC
20._GU_168_/H___
______GG________AA__GG__CCCC
21._GU_168_/H___
______GG________AA__GG____CC
22._GU_168_/H___
__________CC____AA__GG__CCCC
23._GU_168_/H___
______AG________AA__GG__CCCC
24._GU_168_/H___
TTGGGGGGTTCC__CCCCGGTTAACCCC
25._GU_168_/H___
______GG________CC__TT__CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGAGAACCAAAACCAAAAAACCGG
1._GU_168_/H___
__CC______GGAA________AACC__
2._GU_168_/H___
____CC____GG________________
3._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
4._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
5._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
6._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
7._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
8._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
9._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
10._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
11._GU_168_/H___
____CC____GG________________
12._GU_168_/H___
____CC____GG________________
13._GU_168_/H___
____CC____GG________________
14._GU_168_/H___
____CC____GG________________
15._GU_168_/H___
____CC____GG________________
16._GU_168_/H___
____CC____GG________________
17._GU_168_/H___
____CC____GG________________
18._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
19._GU_168_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
20._GU_168_/H___
____CC____GG________________
21._GU_168_/H___
____CC____GG________________
22._GU_168_/H___
__CCCC____GGAATT____TTAA____
23._GU_168_/H___
____CC____GG________________
24._GU_168_/H___
CCTTTTAAAAGGGGTTTTTTTTAAGG__
25._GU_168_/H___
____TT____GG________________
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
1._GU_168_/H___
GG____GG____________AGX_XX_XX_X
2._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
3._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
4._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
5._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
6._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
7._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
8._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
9._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
10._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
11._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
12._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
13._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
14._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
15._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
16._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
17._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
18._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
19._GU_168_/H___
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
20._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
21._GU_168_/H___
GGCC______CCGG__AACCGGX_XX_XX_X
22._GU_168_/H___
GGCC____CC__________AGX_XX_XX_X
23._GU_168_/H___
GGCC______CCGG__AACTAGX_XX_XX_X
24._GU_168_/H___
GGCCCC__CCTTCCCCAATTGGX_XX_XX_X
25._GU_168_/H___
GGCC______TTCC__AATTGGX_XX_XX_X

Input profile: GU_168_/H GC-03-23-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_168_/H RUQ_223

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_168_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H GC-03-023-2-12

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

12._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

13._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

14._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

15._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

16._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

17._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

18._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

21._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_168_/H RUQ_223

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_168_/H GC-03-023-2-12

34.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._GU_168_/H

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998