SNP Profiles of GU 175 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._MITC-000401	CC	AC	AG	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
2._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
3._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
4._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
5._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
6._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
7._GC-01-100-5-17	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
8._GC-05-097-2-48	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
9._GC-05-097-2-48	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
10._GC-05-097-2-48	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
11._GC-05-097-2-48	CC	AC	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
12._GC-01-100-5-17	CC	__	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AA	GG	CC	GG	AA	AA	GG
1._MITC-000401	AA	AA	GG	AG	AG	AA	AA	CC	GG	CC	AA	AC	GG	AA
2._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
3._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
4._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
5._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
6._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
7._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
8._GC-05-097-2-48	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
9._GC-05-097-2-48	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
10._GC-05-097-2-48	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
11._GC-05-097-2-48	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC
12._GC-01-100-5-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	GG	GG	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA	AA
1._MITC-000401	TT	AG	AA	CG	AG	GG	GG	GG	AT	TT	GG	AG	AT	AA
2._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
3._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
4._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
5._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
6._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
7._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
8._GC-05-097-2-48	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
9._GC-05-097-2-48	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
10._GC-05-097-2-48	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
11._GC-05-097-2-48	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT
12._GC-01-100-5-17	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA	TT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	AG	CC	CC	GG
1._MITC-000401	GG	GG	GG	TT	CG	AA	CC	CC	GG	AA	AG	CC	AA	GG
2._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	__
3._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
4._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
5._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
6._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
7._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
8._GC-05-097-2-48	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
9._GC-05-097-2-48	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
10._GC-05-097-2-48	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
11._GC-05-097-2-48	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC
12._GC-01-100-5-17	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	AG	CC	CC	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	AA	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG	CC
1._MITC-000401	AA	AG	AG	AA	CC	GG	AA	AA	AA	AA	AC	CC	GG	CC
2._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
3._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
4._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
5._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
6._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
7._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
8._GC-05-097-2-48	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
9._GC-05-097-2-48	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
10._GC-05-097-2-48	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
11._GC-05-097-2-48	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG
12._GC-01-100-5-17	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__	GG

	71	72	73	74	75	76	77	78	79	80
_Input profile	GG	GG	GG	CC	GG	GG	GG	AA	GG	AA	X_X	X_X	X_X	X_X
1._MITC-000401	GG	GG	AA	CC	AA	CG	GG	AA	AA	AG	X_X	X_X	X_X	X_X
2._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
3._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
4._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
5._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
6._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
7._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
8._GC-05-097-2-48	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
9._GC-05-097-2-48	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
10._GC-05-097-2-48	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
11._GC-05-097-2-48	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X
12._GC-01-100-5-17	CC	CC	GG	CC	CC	GG	CC	AA	CC	AA	X_X	X_X	X_X	X_X

Input profile: GU_175 GC-01-100-5-17

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 17, Tree: 6

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

1._GU_175 MITC-000401

66.9 %
80 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

2._GU_175 GC-01-100-5-17

49.4 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

Mars, 2018

3._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

4._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

5._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Mars, 2018

6._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

Mars, 2018

7._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

Mars, 2018

8._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

9._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

10._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Mars, 2018

11._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

12._GU_175 GC-01-100-5-17

48.1 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP2

Mars, 2018

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP316	38	TcSNP32	39	TcSNP329	40	TcSNP364
41	TcSNP372	42	TcSNP413	43	TcSNP418	44	TcSNP42	45	TcSNP429
46	TcSNP430	47	TcSNP448	48	TcSNP497	49	TcSNP521	50	TcSNP529
51	TcSNP547	52	TcSNP560	53	TcSNP561	54	TcSNP577	55	TcSNP591
56	TcSNP60	57	TcSNP602	58	TcSNP619	59	TcSNP653	60	TcSNP689
61	TcSNP723	62	TcSNP731	63	TcSNP75	64	TcSNP751	65	TcSNP776
66	TcSNP799	67	TcSNP823	68	TcSNP836	69	TcSNP860	70	TcSNP872
71	TcSNP891	72	TcSNP894	73	TcSNP899	74	TcSNP90	75	TcSNP917
76	TcSNP929	77	TcSNP944	78	TcSNP953	79	TcSNP994	80	TcSNP998

SNP Profiles of GU 175 View Data

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Input profile: GU_175 GC-01-100-5-17

1._GU_175 MITC-000401

66.9 % 80 shared markers

2._GU_175 GC-01-100-5-17

49.4 % 77 shared markers

3._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

4._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

5._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

6._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

7._GU_175 GC-01-100-5-17

48.7 % 78 shared markers

8._GU_175 GC-05-097-2-48

48.7 % 78 shared markers

9._GU_175 GC-05-097-2-48

48.7 % 78 shared markers

10._GU_175 GC-05-097-2-48

48.7 % 78 shared markers

11._GU_175 GC-05-097-2-48

48.7 % 78 shared markers

12._GU_175 GC-01-100-5-17

48.1 % 77 shared markers

66.9 %
80 shared markers

49.4 %
77 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.7 %
78 shared markers

48.1 %
77 shared markers