SNP Profiles of GU 221 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._RUQ_200
____________GG______________
3._RUQ_200B
____________GG______________
4._GU_221_/C
__________CCGG__AA__________
5._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
6._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
7._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
8._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
9._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
10._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
11._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
12._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
13._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
14._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
15._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
16._RUQ_200
__________CCGG__AA__________
17._GU_221_/C
__________CCGG__AA__________
18._GU_221_/C
__________CCGG__AA__________
19._GU_221_/C
__________CCGG__AA__________
20._GU_221_/C
__________CCGG__AA__________
21._GU_221_/C
__________CCGG__AA__________
22._GU_221_/C
__________CCGG__AA__________
23._GU_221_/C
__________CCGG__AA__________
24._GU_221_/C
__________CCGG__AA__________
25._GU_221_/C
__________CCGG__AA__________
26._GU_221_/C
__________CCGG__AA__________
27._GU_221_/C
__________CCGG__AA__________
28._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
29._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
30._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
31._RUQ_200
__________CC__GG____GG______
32._GU_221_/C
__________CCGG__AA__________
33._GU_221_/C
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
2._RUQ_200
__TT____________AA__GG______
3._RUQ_200B
__TT____________AA__GG______
4._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
5._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
6._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
7._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
8._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
9._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
10._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
11._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
12._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
13._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
14._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
15._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
16._RUQ_200
__TTTT__CC__TT__AACCGGAGTTTT
17._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
18._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
19._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
20._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
21._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
22._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
23._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
24._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
25._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
26._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
27._GU_221_/C
__TTTT______TT__AACCGGAGTTTT
28._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCGGAGTTTT
29._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCCCGGTTTT
30._GC-01-075-4-11
TTTTTTTT__GGTTCCAACCCCGGTTTT
31._RUQ_200
__TT__CT______CCAACCGGAGTTTT
32._GU_221_/C
__TTTT______TT__AACCCCGGTTTT
33._GU_221_/C
__TTTT______TT__AACCCCGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
2._RUQ_200
__________GG____________GG__
3._RUQ_200B
__________GG____________GG__
4._GU_221_/C
CC____AACCGG__CCGG____AT____
5._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
6._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
7._GC-01-075-4-11
CC__GGAACCGGGGCCGGGGAAATGGGG
8._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
9._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
10._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
11._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
12._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
13._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
14._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
15._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
16._RUQ_200
CC____AACCGG__CCGG____AT____
17._GU_221_/C
CC____AACCGG__CCGG____AT____
18._GU_221_/C
CC____AACCGG__CCGG____AT____
19._GU_221_/C
CC____AACCGG__CCGG____AT____
20._GU_221_/C
CC____AACCGG__CCGG____AT____
21._GU_221_/C
CC____AACCGG__CCGG____AT____
22._GU_221_/C
CC____AACCGG__CCGG____AT____
23._GU_221_/C
CC____AACCGG__CCGG____AT____
24._GU_221_/C
CC____AACCGG__CCGG____AT____
25._GU_221_/C
CC____AACCGG__CCGG____AT____
26._GU_221_/C
CC____AACCGG__CCGG____AT____
27._GU_221_/C
CC____AACCGG__CCGG____AT____
28._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
29._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
30._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
31._RUQ_200
____GGAACCGG__CC________GGGG
32._GU_221_/C
CC____AACCGG__CCGG____AA____
33._GU_221_/C
CC____AACCGG__CCGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_200
__________________AA______CC
3._RUQ_200B
__________________AA______CC
4._GU_221_/C
AA______GG________AA__GG__CC
5._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
6._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
7._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
8._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
9._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
10._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
11._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
12._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
13._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
14._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
15._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
16._RUQ_200
AA______AG________AA__GG__CC
17._GU_221_/C
AA______GG________AA__GG__CC
18._GU_221_/C
AA______GG________AA__GG__CC
19._GU_221_/C
AA______GG________AA__GG__CC
20._GU_221_/C
AA______GG________AA__GG__CC
21._GU_221_/C
AA______GG________AA__GG__CC
22._GU_221_/C
AA______GG________AA__GG__CC
23._GU_221_/C
AA______GG________AA__GG__CC
24._GU_221_/C
AA______GG________AA__GG__CC
25._GU_221_/C
AA______GG________AA__GG__CC
26._GU_221_/C
AA______GG________AA__GG__CC
27._GU_221_/C
AA______GG________AA__GG__CC
28._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
29._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
30._GC-01-075-4-11
AATTGGGGGGTTCC__CCAAGGGGGGCC
31._RUQ_200
AA__________CC____AA__GG__CC
32._GU_221_/C
AA______GG________AA__GG__CC
33._GU_221_/C
AA______GG________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGAGAACCAAAAAAAAAAAACC
1._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
2._RUQ_200
AC__CC______GGAA________AACC
3._RUQ_200B
AC__CC______GGAA________AACC
4._GU_221_/C
AC__________GG______________
5._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTT__AAGG
6._GC-01-075-4-11
ACCCCC__AAAAGGAATTTTTTTTAAGG
7._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
8._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
9._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
10._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
11._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
12._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
13._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
14._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
15._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
16._RUQ_200
AC____CC____GG______________
17._GU_221_/C
AC____CC____GG______________
18._GU_221_/C
AC____CC____GG______________
19._GU_221_/C
AC____CC____GG______________
20._GU_221_/C
AC____CC____GG______________
21._GU_221_/C
AC____CC____GG______________
22._GU_221_/C
AC____CC____GG______________
23._GU_221_/C
AC____CC____GG______________
24._GU_221_/C
AC____CC____GG______________
25._GU_221_/C
AC____CC____GG______________
26._GU_221_/C
AC____CC____GG______________
27._GU_221_/C
AC____CC____GG______________
28._GC-01-075-4-11
ACCCCCCCAAAAGG__TTTTTTTTAAGG
29._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
30._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
31._RUQ_200
AC__CCCC____GGAATT____TTAA__
32._GU_221_/C
CC____CC____GG______________
33._GU_221_/C
CC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._RUQ_200
__GG____GG____________AAX_XX_X
3._RUQ_200B
__GG____GG____________AAX_XX_X
4._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
5._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
6._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
7._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
8._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
9._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
10._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
11._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
12._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
13._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
14._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
15._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
16._RUQ_200
__GGCC______CCGG__AATTAAX_XX_X
17._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
18._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
19._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
20._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
21._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
22._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
23._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
24._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
25._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
26._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
27._GU_221_/C
__GGCC______CCGG__AATTAAX_XX_X
28._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
29._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
30._GC-01-075-4-11
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
31._RUQ_200
__GGCC____CC__________AAX_XX_X
32._GU_221_/C
__GGCC______CCGG__AACCGGX_XX_X
33._GU_221_/C
__GGCC______CCGG__AACCGGX_XX_X

Input profile: GU_221_/C GC-01-75-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/C RUQ_200

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_221_/C RUQ_200

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_221_/C RUQ_200B

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.997

4._GU_221_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

5._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_221_/C RUQ_200

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

18._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

19._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

20._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

21._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

22._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

23._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

24._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

25._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

26._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

27._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

28._GU_221_/C GC-01-075-4-11

46.8 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C RUQ_200

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._GU_221_/C

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

33._GU_221_/C

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998