SNP Profiles of GU 353   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._GU_221_/C___
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._GU_221_/C___
____________GG______________
3._GU_221_/C___
____________GG______________
4._GU_221_/C___
__________CCGG__AA__________
5._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
6._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
7._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
8._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
9._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
10._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
11._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
12._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
13._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
14._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
15._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
16._GU_221_/C___
__________CCGG__AA__________
17._GU_221_/C___
__________CCGG__AA__________
18._GU_221_/C___
__________CCGG__AA__________
19._GU_221_/C___
__________CCGG__AA__________
20._GU_221_/C___
__________CCGG__AA__________
21._GU_221_/C___
__________CCGG__AA__________
22._GU_221_/C___
__________CCGG__AA__________
23._GU_221_/C___
__________CCGG__AA__________
24._GU_221_/C___
__________CCGG__AA__________
25._GU_221_/C___
__________CCGG__AA__________
26._GU_221_/C___
__________CCGG__AA__________
27._GU_221_/C___
__________CCGG__AA__________
28._GU_221_/C___
CCAAAACCTTCCGGGGAACCGGTTCCTT
29._GU_221_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
30._GU_221_/C___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
31._GU_221_/C___
__________CC__GG____GG______
32._GU_221_/C___
__________CCGG__AA__________
33._GU_221_/C___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._GU_221_/C___
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
2._GU_221_/C___
__TT____________AA__GG______
3._GU_221_/C___
__TT____________AA__GG______
4._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
5._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
6._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
7._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
8._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
9._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
10._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
11._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
12._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
13._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
14._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
15._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
16._GU_221_/C___
__TTTT__CC__TT__AACCGGAGTTTT
17._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
18._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
19._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
20._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
21._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
22._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
23._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
24._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
25._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
26._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
27._GU_221_/C___
__TTTT______TT__AACCGGAGTTTT
28._GU_221_/C___
TTTTTTTT__GGTTCCAACCGGAGTTTT
29._GU_221_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
30._GU_221_/C___
TTTTTTTT__GGTTCCAACCCCGGTTTT
31._GU_221_/C___
__TT__CT______CCAACCGGAGTTTT
32._GU_221_/C___
__TTTT______TT__AACCCCGGTTTT
33._GU_221_/C___
__TTTT______TT__AACCCCGGTTTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GU_221_/C___
GGTTGGAAGGGGGGGGGGCCTTATGGGG
2._GU_221_/C___
__________GG____________GG__
3._GU_221_/C___
__________GG____________GG__
4._GU_221_/C___
CC____AACCGG__CCGG____AT____
5._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
6._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
7._GU_221_/C___
CC__GGAACCGGGGCCGGGGAAATGGGG
8._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
9._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
10._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
11._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
12._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
13._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
14._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
15._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
16._GU_221_/C___
CC____AACCGG__CCGG____AT____
17._GU_221_/C___
CC____AACCGG__CCGG____AT____
18._GU_221_/C___
CC____AACCGG__CCGG____AT____
19._GU_221_/C___
CC____AACCGG__CCGG____AT____
20._GU_221_/C___
CC____AACCGG__CCGG____AT____
21._GU_221_/C___
CC____AACCGG__CCGG____AT____
22._GU_221_/C___
CC____AACCGG__CCGG____AT____
23._GU_221_/C___
CC____AACCGG__CCGG____AT____
24._GU_221_/C___
CC____AACCGG__CCGG____AT____
25._GU_221_/C___
CC____AACCGG__CCGG____AT____
26._GU_221_/C___
CC____AACCGG__CCGG____AT____
27._GU_221_/C___
CC____AACCGG__CCGG____AT____
28._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAATGGGG
29._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
30._GU_221_/C___
CCAAGGAACCGGGGCCGGGGAAAAGGGG
31._GU_221_/C___
____GGAACCGG__CC________GGGG
32._GU_221_/C___
CC____AACCGG__CCGG____AA____
33._GU_221_/C___
CC____AACCGG__CCGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GU_221_/C___
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GU_221_/C___
__________________AA______CC
3._GU_221_/C___
__________________AA______CC
4._GU_221_/C___
AA______GG________AA__GG__CC
5._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
6._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
7._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
8._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
9._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
10._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
11._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
12._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
13._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
14._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
15._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
16._GU_221_/C___
AA______AG________AA__GG__CC
17._GU_221_/C___
AA______GG________AA__GG__CC
18._GU_221_/C___
AA______GG________AA__GG__CC
19._GU_221_/C___
AA______GG________AA__GG__CC
20._GU_221_/C___
AA______GG________AA__GG__CC
21._GU_221_/C___
AA______GG________AA__GG__CC
22._GU_221_/C___
AA______GG________AA__GG__CC
23._GU_221_/C___
AA______GG________AA__GG__CC
24._GU_221_/C___
AA______GG________AA__GG__CC
25._GU_221_/C___
AA______GG________AA__GG__CC
26._GU_221_/C___
AA______GG________AA__GG__CC
27._GU_221_/C___
AA______GG________AA__GG__CC
28._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
29._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
30._GU_221_/C___
AATTGGGGGGTTCC__CCAAGGGGGGCC
31._GU_221_/C___
AA__________CC____AA__GG__CC
32._GU_221_/C___
AA______GG________AA__GG__CC
33._GU_221_/C___
AA______GG________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGGGAGAACCAAAAAAAAAAAACC
1._GU_221_/C___
ACGGGGGGAGAACCAAAAAAAAAAAACC
2._GU_221_/C___
AC__CC______GGAA________AACC
3._GU_221_/C___
AC__CC______GGAA________AACC
4._GU_221_/C___
AC__________GG______________
5._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTT__AAGG
6._GU_221_/C___
ACCCCC__AAAAGGAATTTTTTTTAAGG
7._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
8._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
9._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
10._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
11._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
12._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
13._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
14._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
15._GU_221_/C___
ACCCCCCCAAAAGGAATTTTTTTTAAGG
16._GU_221_/C___
AC____CC____GG______________
17._GU_221_/C___
AC____CC____GG______________
18._GU_221_/C___
AC____CC____GG______________
19._GU_221_/C___
AC____CC____GG______________
20._GU_221_/C___
AC____CC____GG______________
21._GU_221_/C___
AC____CC____GG______________
22._GU_221_/C___
AC____CC____GG______________
23._GU_221_/C___
AC____CC____GG______________
24._GU_221_/C___
AC____CC____GG______________
25._GU_221_/C___
AC____CC____GG______________
26._GU_221_/C___
AC____CC____GG______________
27._GU_221_/C___
AC____CC____GG______________
28._GU_221_/C___
ACCCCCCCAAAAGG__TTTTTTTTAAGG
29._GU_221_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
30._GU_221_/C___
CCCCCCCCAAAAGGAATTGGTTTTAAGG
31._GU_221_/C___
AC__CCCC____GGAATT____TTAA__
32._GU_221_/C___
CC____CC____GG______________
33._GU_221_/C___
CC____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._GU_221_/C___
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._GU_221_/C___
__GG____GG____________AAX_XX_X
3._GU_221_/C___
__GG____GG____________AAX_XX_X
4._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
5._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
6._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
7._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
8._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
9._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
10._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
11._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
12._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
13._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
14._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
15._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
16._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
17._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
18._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
19._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
20._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
21._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
22._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
23._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
24._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
25._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
26._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
27._GU_221_/C___
__GGCC______CCGG__AATTAAX_XX_X
28._GU_221_/C___
__GGCCCCGGCCCCGGCCAATTAAX_XX_X
29._GU_221_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
30._GU_221_/C___
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
31._GU_221_/C___
__GGCC____CC__________AAX_XX_X
32._GU_221_/C___
__GGCC______CCGG__AACCGGX_XX_X
33._GU_221_/C___
__GGCC______CCGG__AACCGGX_XX_X

Input profile: GU_221_/C GC-01-75-4-11

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/C RUQ_200

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_221_/C RUQ_200

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_221_/C RUQ_200B

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_221_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

5._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_221_/C RUQ_200

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

18._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

19._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

20._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

21._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

22._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

23._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

24._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

25._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

26._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

27._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

28._GU_221_/C GC-01-075-4-11

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

31._GU_221_/C RUQ_200

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._GU_221_/C

42.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

33._GU_221_/C

42.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998