SNP Profiles of GU 353   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_221_/H___
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
3._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
4._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
5._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
6._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
7._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
8._GU_221_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
9._GU_221_/H___
__________CCGG__AA__________
10._GU_221_/H___
__________CCGG__AA__________
11._GU_221_/H___
__________CCGG__AA__________
12._GU_221_/H___
__________CCGG__AA__________
13._GU_221_/H___
__________CCGG__AA__________
14._GU_221_/H___
__________CCGG__AA__________
15._GU_221_/H___
__________CCGG__AA__________
16._GU_221_/H___
__________CCGG__AT__________
17._GU_221_/H___
CCCCGGCCTTCCGGGGATTTAACCCCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
1._GU_221_/H___
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
2._GU_221_/H___
TTTTTT__GGTTCCAACCGGAGTTTTCC
3._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
4._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
5._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
6._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
7._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
8._GU_221_/H___
TTTTTTTTGGTTCCAACCGGAGTTTTCC
9._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
10._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
11._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
12._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
13._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
14._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
15._GU_221_/H___
__TTTT____TT__AACCGGAGTTTTCC
16._GU_221_/H___
__GTTT____TT__ACCCCCAGGGTTCC
17._GU_221_/H___
TTGTTTTTAGTTCCACCCCCAGGGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
1._GU_221_/H___
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
2._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
3._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
4._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
5._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
6._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
7._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
8._GU_221_/H___
AAGGAACCGGGGCCGGGGAAAAAGGGAA
9._GU_221_/H___
____AACCGG__CCGG____AA____AA
10._GU_221_/H___
____AACCGG__CCGG____AA____AA
11._GU_221_/H___
____AACCGG__CCGG____AA____AA
12._GU_221_/H___
____AACCGG__CCGG____AA____AA
13._GU_221_/H___
____AACCGG__CCGG____AA____AA
14._GU_221_/H___
____AACCGG__CCGG____AA____AA
15._GU_221_/H___
____AACCGG__CCGG____AA____AA
16._GU_221_/H___
____CCCGGG__TTGG____AA____AA
17._GU_221_/H___
TTGGCCCGGGGGTTGGTTAAAAAAGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_221_/H___
AGGGGGGGTTGGAACCAAGGCCGGCCCC
2._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
3._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
4._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
5._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
6._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
7._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
8._GU_221_/H___
CTGGGGGGTTCC__CCAAGGGGGGCCCC
9._GU_221_/H___
______GG________AA__GG__CCCC
10._GU_221_/H___
______GG________AA__GG__CCCC
11._GU_221_/H___
______GG________AA__GG__CCCC
12._GU_221_/H___
______GG________AA__GG__CCCC
13._GU_221_/H___
______GG________AA__GG__CCCC
14._GU_221_/H___
______GG________AA__GG__CCCC
15._GU_221_/H___
______GG________AA__GG__CCCC
16._GU_221_/H___
______GG________AC__GG__GGCC
17._GU_221_/H___
CCAAAAGGAAGG__AAACAAGGGGGGCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGAGAACCAAAAAAAAAAAACCGG
1._GU_221_/H___
GGGGGGAGAACCAAAAAAAAAAAACCGG
2._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
3._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAA____
4._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
5._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
6._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
7._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
8._GU_221_/H___
CCCCCCAAAAGGAATTTTTTTTAAGG__
9._GU_221_/H___
____CC____GG________________
10._GU_221_/H___
____CC____GG________________
11._GU_221_/H___
____CC____GG________________
12._GU_221_/H___
____CC____GG________________
13._GU_221_/H___
____CC____GG________________
14._GU_221_/H___
____CC____GG________________
15._GU_221_/H___
____CC____GG________________
16._GU_221_/H___
____TT____GG________________
17._GU_221_/H___
CCCCTTAAAAGGAATTTTTTTTCCCCAA
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_221_/H___
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
3._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
4._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
5._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
6._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
7._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
8._GU_221_/H___
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
9._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
10._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
11._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
12._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
13._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
14._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
15._GU_221_/H___
GGCC______CCGG__AATTAAX_XX_XX_X
16._GU_221_/H___
CCTT______CTCG__TTCCAAX_XX_XX_X
17._GU_221_/H___
CCTTCGGGCCCTCGCCTTCCAAX_XX_XX_X

Input profile: GU_221_/H GC-01-74-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/H GU_221_H_Fld#_162_Plt#_1

identical
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

2._GU_221_/H GC-01-074-4-10

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._GU_221_/H GC-01-074-4-10

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

7._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016

10._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

11._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

12._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

13._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

14._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

15._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

16._GU_221_/H

39.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

17._GU_221_/H GC-01-074-4-10

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998