SNP Profiles of GU 154 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_296_/H___
____________GG______________
2._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
3._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
4._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
5._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
6._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
7._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
8._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
9._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
10._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
11._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
12._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
13._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
14._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
15._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
16._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
17._GU_296_/H___
CCAAAGCCTTCCGGGGAACCGGTTCCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
1._GU_296_/H___
__TT__________AA__CG________
2._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
3._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
4._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
5._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
6._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
7._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
8._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
9._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
10._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
11._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
12._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
13._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
14._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
15._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
16._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GU_296_/H___
TTTTTTTTGGTTCCAACCCGGGTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._GU_296_/H___
________GG____________GG____
2._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
3._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
4._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
5._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
6._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
7._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
8._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
9._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
10._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
11._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
12._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
13._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
14._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
15._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
16._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
17._GU_296_/H___
AAGGAACCGGGGCCGGGGAATTGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCAC
1._GU_296_/H___
________________AA______CCAC
2._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
3._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
4._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
5._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
6._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
7._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
8._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
9._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
10._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
11._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
12._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
13._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
14._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
15._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
16._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
17._GU_296_/H___
TTGGGGGGTTCC__CCAAGGGGGGCCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_296_/H___
__CC______GGAA________AACC__
2._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAA____
3._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
4._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
5._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
6._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
7._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
8._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
9._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
10._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
11._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
12._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
13._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
14._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
15._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
16._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
17._GU_296_/H___
CCCCCCAAAAGGAATTGGTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
1._GU_296_/H___
GG____GG____________GGX_XX_XX_X
2._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
3._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
4._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
5._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
6._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
7._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
8._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
9._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
10._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
11._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
12._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
13._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
14._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
15._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
16._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X
17._GU_296_/H___
GGCCCCGGCCCCGGCCAACTGGX_XX_XX_X

Input profile: GU_296_/H GC-01-76-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_296_/H RUQ_230

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_296_/H GC-01-076-4-12

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998