SNP Profiles of GU-296H View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	AG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_230	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
3._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
4._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
5._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
6._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
7._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
8._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
9._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
10._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
11._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
12._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
13._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
14._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
15._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
16._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
17._GC-01-076-4-12	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	GG	AA	GG	AA	GG	CG	GG	AA	AA	GG
1._RUQ_230	__	TT	__	__	__	__	__	AA	__	CG	__	__	__	__
2._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
3._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
4._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
5._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
6._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
7._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
8._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
9._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
10._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
11._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
12._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
13._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
14._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
15._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
16._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC
17._GC-01-076-4-12	TT	TT	TT	TT	GG	TT	CC	AA	CC	CG	GG	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	GG	GG	GG	GG	GG	CC	TT	TT	GG	GG	AA
1._RUQ_230	__	__	__	__	GG	__	__	__	__	__	__	GG	__	__
2._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
3._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
4._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
5._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
6._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
7._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
8._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
9._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
10._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
11._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
12._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
13._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
14._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
15._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
16._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA
17._GC-01-076-4-12	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	TT	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	AC
1._RUQ_230	__	__	__	__	__	__	__	__	AA	__	__	__	CC	AC
2._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
3._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
4._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
5._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
6._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
7._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
8._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
9._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
10._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
11._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
12._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
13._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
14._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
15._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
16._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC
17._GC-01-076-4-12	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	GG	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG
1._RUQ_230	__	CC	__	__	__	GG	AA	__	__	__	__	AA	CC	__
2._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	__	__
3._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
4._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
5._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
6._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
7._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
8._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
9._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
10._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
11._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
12._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
13._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
14._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
15._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
16._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
17._GC-01-076-4-12	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	GG	GG	AA	AG	GG	X_X	X_X	X_X
1._RUQ_230	GG	__	__	GG	__	__	__	__	__	__	GG	X_X	X_X	X_X
2._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
3._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
4._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
5._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
6._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
7._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
8._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
9._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
10._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
11._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
12._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
13._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
14._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
15._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
16._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X
17._GC-01-076-4-12	GG	CC	CC	GG	CC	CC	GG	CC	AA	CT	GG	X_X	X_X	X_X

Input profile: GU_296_/H GC-01-76-4-12

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

1._GU_296_/H RUQ_230

76.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

GU
0.993

2._GU_296_/H GC-01-076-4-12

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

Mars, 2018

3._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

Mars, 2018

4._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

Mars, 2018

5._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

Mars, 2018

6._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

Mars, 2018

7._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

Mars, 2018

8._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

Mars, 2018

9._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

Mars, 2018

10._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Mars, 2018

11._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

Mars, 2018

12._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

Mars, 2018

13._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

14._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Mars, 2018

15._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

16._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Mars, 2018

17._GU_296_/H GC-01-076-4-12

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998

SNP Profiles of GU-296H View Data

Show/Hide Profiles

Input profile: GU_296_/H GC-01-76-4-12

1._GU_296_/H RUQ_230

76.5 % 17 shared markers

2._GU_296_/H GC-01-076-4-12

48.7 % 78 shared markers

3._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

4._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

5._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

6._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

7._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

8._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

9._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

10._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

11._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

12._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

13._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

14._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

15._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

16._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

17._GU_296_/H GC-01-076-4-12

48.1 % 79 shared markers

76.5 %
17 shared markers

48.7 %
78 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers

48.1 %
79 shared markers