SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGACAAAAGGCCAAGGGGAAAGAC
1._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._PA_150_[PER]_Fld#_173_Plt#_1
AACCAACCAAGGGGCCAAGGGGAAAAAA
4._RUQ_1731
AACCAACCAAGGGGCCAAGGGGAAAAAA
5._PA_150_[PER]
__________TTGG__AA__________
6._PA_150_[PER]
__________TTGG__AA__________
7._PA_150_[PER]
__________TTGG__AA__________
8._PA_150_[PER]
__________TTGG__AA__________
9._PA_150_[PER]
__________TTGG__AA__________
10._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
11._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
12._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
13._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._RUQ_1731
____________GG______________
16._PA_150_[PER]
__________CTGG__AA__________
17._PA_150_[PER]
__________CTGG______________
18._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
19._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
20._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
21._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
22._PA_150_[PER]
__________CCGG__AA__________
23._PA_150_[PER]
__________CCGG__AA__________
24._PA_150_[PER]
__________CCGG__AA__________
25._PA_150_[PER]
__________CCGG__AA__________
26._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
27._PA_150_[PER]
__________CCAG__AA__________
28._PA_150_[PER]
__________CCAG__AA__________
29._PA_150_[PER]
__________CCAG__AA__________
30._PA_150_[PER]
__________CCAG__AA__________
31._PA_150_[PER]
__________CTAG__AT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAGAGACGGAGAGACAACGAAACAA
1._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCGG
3._PA_150_[PER]_Fld#_173_Plt#_1
AAAAAAAAACGGAAGGACGGCCAGCC__
4._RUQ_1731
AAAAAAAAACGGAAGGACGGCCAGCCGG
5._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
6._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
7._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
8._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
9._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
10._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
11._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
12._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
13._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._RUQ_1731
__TT____________AC__GG______
16._PA_150_[PER]
__TTTT__AA__TT__ACTTCCAAGGCT
17._PA_150_[PER]
__GTTT__CC______CCTTCGAGGGTT
18._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
19._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
20._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
21._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
22._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
23._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
24._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
25._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
26._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
27._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
28._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
29._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
30._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
31._PA_150_[PER]
__GTCC__AC__CT__AACTCGAGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGACCGAGGGGGGGCCATATGGGG
1._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
2._GC-01-34-2-11
AGTTGGACGGAGGGGGGGCCTTATGGGG
3._PA_150_[PER]_Fld#_173_Plt#_1
AGATGGAAGGGGGGGGGGCCTTAAGGGG
4._RUQ_1731
AGATGGAAGGGGGGGGGGCCTTAAGGGG
5._PA_150_[PER]
TT____AACGAG__CCGG____AT____
6._PA_150_[PER]
TT____AACGAG__CCGG____AT____
7._PA_150_[PER]
TT____AACGAG__CCGG____AT____
8._PA_150_[PER]
TT____AACGAG__CCGG____AT____
9._PA_150_[PER]
TT____AACGAG__CCGG____AT____
10._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
11._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
12._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
13._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
14._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
15._RUQ_1731
__________GG____________GG__
16._PA_150_[PER]
CC____AACCAA__CTGG____TT____
17._PA_150_[PER]
______AC__AA__CCCC____TT____
18._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
19._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
20._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
21._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
22._PA_150_[PER]
CT____AACCGG__CCGG____AA____
23._PA_150_[PER]
CT____AACCGG__CCGG____AA____
24._PA_150_[PER]
CT____AACCGG__CCGG____AA____
25._PA_150_[PER]
CT____AA__GG__CCGG____AA____
26._GC-01-034-2-11
CTATGGACCCAAGGCCCGGTAAATAGGG
27._PA_150_[PER]
CT____AACCAG__CCGG____AT____
28._PA_150_[PER]
CT____AACCAG__CCGG____AT____
29._PA_150_[PER]
CT____AACCAG__CCGG____AT____
30._PA_150_[PER]
CT____AACCAG__CCGG____AT____
31._PA_150_[PER]
CT____ACCCAA__CCCG____AT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGATGGAGCCACGGAAAGGG
1._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
2._GC-01-34-2-11
AAAAGGGGGGTTGGGGCCACAAACAGCG
3._PA_150_[PER]_Fld#_173_Plt#_1
AAAAGGGGGGAAGGGGCCACAAAAAGCG
4._RUQ_1731
AAAAGGGGGGAAGGGGCCACAAAAAGCG
5._PA_150_[PER]
AA______GG________AC__TT__GG
6._PA_150_[PER]
AA______GG________AC__TT__GG
7._PA_150_[PER]
AA______GG________AC__TT__GG
8._PA_150_[PER]
AA______GG________AC__TT__GG
9._PA_150_[PER]
AA______GG________AC__TT__GG
10._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
11._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
12._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
13._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
14._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
15._RUQ_1731
__________________AA______CG
16._PA_150_[PER]
AA______GG________CC__GT__GG
17._PA_150_[PER]
AA______GG________AC__GG__GG
18._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
19._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
20._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
21._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
22._PA_150_[PER]
AA______GG________AC__TT__CG
23._PA_150_[PER]
AA______GG________AC__TT__CG
24._PA_150_[PER]
AA______GG________AC__TT__CG
25._PA_150_[PER]
AA______GG________AC__TT__CG
26._GC-01-034-2-11
AACTAGAGGGATCG__ACACAGGTAGCC
27._PA_150_[PER]
AA______GG________AC__GT__CG
28._PA_150_[PER]
AA______GG________AC__GT__CG
29._PA_150_[PER]
AA______GG________AC__GT__CG
30._PA_150_[PER]
AA______GG________AC__GT__CG
31._PA_150_[PER]
AA______GG________AC__GT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAGAAGGAAACGGAAAAAAAAAACC
1._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
2._GC-01-34-2-11
CCGGAGAAAGAACCAGAAAACCAAAACG
3._PA_150_[PER]_Fld#_173_Plt#_1
ACGGAGAAAAAACCAGAAAACCAAAAGG
4._RUQ_1731
ACGGAGAAAAAACCAGAAAACCAAAAGG
5._PA_150_[PER]
AA____TT____GT______________
6._PA_150_[PER]
AA____TT____GT______________
7._PA_150_[PER]
AA____TT____GT______________
8._PA_150_[PER]
AA____TT____GT______________
9._PA_150_[PER]
AA____TT____GT______________
10._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
11._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
12._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
13._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
14._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
15._RUQ_1731
AC__CT______GGAG________AATT
16._PA_150_[PER]
AA____CT____GG______________
17._PA_150_[PER]
AC____CT____GG______________
18._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
19._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
20._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
21._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
22._PA_150_[PER]
AC____TT____GG______________
23._PA_150_[PER]
AC____TT____GG______________
24._PA_150_[PER]
AC____TT____GG______________
25._PA_150_[PER]
AC____TT____GG______________
26._GC-01-034-2-11
ACCCCTTTAAAAGGAGTTTTGTTTACCG
27._PA_150_[PER]
CC____TT____GG______________
28._PA_150_[PER]
CC____TT____GG______________
29._PA_150_[PER]
CC____TT____GG______________
30._PA_150_[PER]
CC____TT____GG______________
31._PA_150_[PER]
AC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
1._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
2._GC-01-34-2-11
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
3._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
4._RUQ_1731
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
5._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
6._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
7._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
8._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
9._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
10._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
11._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
12._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
13._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
14._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
15._RUQ_1731
__GG____GG____________AGX_XX_X
16._PA_150_[PER]
__CCCT______CTGG__AACTAGX_XX_X
17._PA_150_[PER]
__CCCC______CCCG__AACTAAX_XX_X
18._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
19._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
20._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
21._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
22._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
23._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
24._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
25._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
26._GC-01-034-2-11
AACGCTCGAGCCCTCCCCATCTAGX_XX_X
27._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
28._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
29._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
30._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
31._PA_150_[PER]
__CGCT______CTCC__ATCTAGX_XX_X

Input profile: PA_150_[PER] GC-01-34-2-11

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

1._PA_150_[PER] GC-01-34-2-11

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

75 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

71.6 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

4._PA_150_[PER] RUQ_1731

70.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

6._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

7._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

8._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

9._PA_150_[PER]

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

15._PA_150_[PER] RUQ_1731

50 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

16._PA_150_[PER]

45.7 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

17._PA_150_[PER]

40.3 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

18._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

38.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

22._PA_150_[PER]

38.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

38.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

38.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

25._PA_150_[PER]

38.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

26._PA_150_[PER] GC-01-034-2-11

37 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

27._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

28._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

29._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

30._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

31._PA_150_[PER]

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998