SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
1._RUQ_1731
AACCAACCAAGGGGCCAAGGGGAAAAAA
2._PA_150_[PER]_Fld#_173_Plt#_1
AACCAACCAAGGGGCCAAGGGGAAAAAA
3._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
4._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
5._RUQ_1731
____________GG______________
6._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
7._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
8._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
9._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
10._PA_150_[PER]
__________CCAG__AA__________
11._PA_150_[PER]
__________CCAG__AA__________
12._PA_150_[PER]
__________CCAG__AA__________
13._PA_150_[PER]
__________CCAG__AA__________
14._PA_150_[PER]
__________CCGG__AA__________
15._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
16._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
17._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
18._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
19._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
20._PA_150_[PER]
__________CTGG______________
21._PA_150_[PER]
__________CTAG__AT__________
22._PA_150_[PER]
__________CCGG__AA__________
23._PA_150_[PER]
__________CCGG__AA__________
24._PA_150_[PER]
__________CCGG__AA__________
25._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
26._PA_150_[PER]
__________TTGG__AA__________
27._PA_150_[PER]
__________TTGG__AA__________
28._PA_150_[PER]
__________TTGG__AA__________
29._PA_150_[PER]
__________TTGG__AA__________
30._PA_150_[PER]
__________TTGG__AA__________
31._PA_150_[PER]
__________CTGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAGAAACGGAAGGCCGGCCGGCCGG
1._RUQ_1731
AAAAAAAAACGGAAGGACGGCCAGCCGG
2._PA_150_[PER]_Fld#_173_Plt#_1
AAAAAAAAACGGAAGGACGGCCAGCC__
3._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
4._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
5._RUQ_1731
__TT____________AC__GG______
6._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
7._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
8._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
9._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCC
10._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
11._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
12._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
13._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCC
14._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
15._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
16._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
17._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
18._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
19._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
20._PA_150_[PER]
__GTTT__CC______CCTTCGAGGGTT
21._PA_150_[PER]
__GTCC__AC__CT__AACTCGAGGTCT
22._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
23._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
24._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCC
25._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
26._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
27._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
28._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
29._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
30._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
31._PA_150_[PER]
__TTTT__AA__TT__ACTTCCAAGGCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGTTGGACGGAGGGGGGGCCTTATGGGG
1._RUQ_1731
AGATGGAAGGGGGGGGGGCCTTAAGGGG
2._PA_150_[PER]_Fld#_173_Plt#_1
AGATGGAAGGGGGGGGGGCCTTAAGGGG
3._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
4._GC-01-34-2-11
AATTGGACCGAGGGGGGGCCATATGGGG
5._RUQ_1731
__________GG____________GG__
6._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
7._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
8._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
9._GC-01-034-2-11
CTAAGGAACCAGGGCCGGGGAAATGGGG
10._PA_150_[PER]
CT____AACCAG__CCGG____AT____
11._PA_150_[PER]
CT____AACCAG__CCGG____AT____
12._PA_150_[PER]
CT____AACCAG__CCGG____AT____
13._PA_150_[PER]
CT____AACCAG__CCGG____AT____
14._PA_150_[PER]
CT____AA__GG__CCGG____AA____
15._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
16._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
17._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
18._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
19._GC-01-034-2-11
TTAAGGAACGAGGGCCGGGGATATGGGG
20._PA_150_[PER]
______AC__AA__CCCC____TT____
21._PA_150_[PER]
CT____ACCCAA__CCCG____AT____
22._PA_150_[PER]
CT____AACCGG__CCGG____AA____
23._PA_150_[PER]
CT____AACCGG__CCGG____AA____
24._PA_150_[PER]
CT____AACCGG__CCGG____AA____
25._GC-01-034-2-11
CTATGGACCCAAGGCCCGGTAAATAGGG
26._PA_150_[PER]
TT____AACGAG__CCGG____AT____
27._PA_150_[PER]
TT____AACGAG__CCGG____AT____
28._PA_150_[PER]
TT____AACGAG__CCGG____AT____
29._PA_150_[PER]
TT____AACGAG__CCGG____AT____
30._PA_150_[PER]
TT____AACGAG__CCGG____AT____
31._PA_150_[PER]
CC____AACCAA__CTGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGGGCCACAAACAGCG
1._RUQ_1731
AAAAGGGGGGAAGGGGCCACAAAAAGCG
2._PA_150_[PER]_Fld#_173_Plt#_1
AAAAGGGGGGAAGGGGCCACAAAAAGCG
3._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
4._GC-01-34-2-11
AAAAGGGGGGATGGAGCCACGGAAAGGG
5._RUQ_1731
__________________AA______CG
6._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
7._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
8._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
9._GC-01-034-2-11
AATTGGGGGGTTCC__CCACAAGTAGCG
10._PA_150_[PER]
AA______GG________AC__GT__CG
11._PA_150_[PER]
AA______GG________AC__GT__CG
12._PA_150_[PER]
AA______GG________AC__GT__CG
13._PA_150_[PER]
AA______GG________AC__GT__CG
14._PA_150_[PER]
AA______GG________AC__TT__CG
15._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
16._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
17._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
18._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
19._GC-01-034-2-11
AATTGGGGGGATCC__CCACGGTTAGGG
20._PA_150_[PER]
AA______GG________AC__GG__GG
21._PA_150_[PER]
AA______GG________AC__GT__CC
22._PA_150_[PER]
AA______GG________AC__TT__CG
23._PA_150_[PER]
AA______GG________AC__TT__CG
24._PA_150_[PER]
AA______GG________AC__TT__CG
25._GC-01-034-2-11
AACTAGAGGGATCG__ACACAGGTAGCC
26._PA_150_[PER]
AA______GG________AC__TT__GG
27._PA_150_[PER]
AA______GG________AC__TT__GG
28._PA_150_[PER]
AA______GG________AC__TT__GG
29._PA_150_[PER]
AA______GG________AC__TT__GG
30._PA_150_[PER]
AA______GG________AC__TT__GG
31._PA_150_[PER]
AA______GG________CC__GT__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAGAAAGAACCAGAAAACCAAAACG
1._RUQ_1731
ACGGAGAAAAAACCAGAAAACCAAAAGG
2._PA_150_[PER]_Fld#_173_Plt#_1
ACGGAGAAAAAACCAGAAAACCAAAAGG
3._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
4._GC-01-34-2-11
AAGGAGAAGGAAACGGAAAAAAAAAACC
5._RUQ_1731
AC__CT______GGAG________AATT
6._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
7._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
8._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
9._GC-01-034-2-11
CCCCCTTTAAAAGGAGTTTTGGTTAACG
10._PA_150_[PER]
CC____TT____GG______________
11._PA_150_[PER]
CC____TT____GG______________
12._PA_150_[PER]
CC____TT____GG______________
13._PA_150_[PER]
CC____TT____GG______________
14._PA_150_[PER]
AC____TT____GG______________
15._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
16._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
17._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
18._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
19._GC-01-034-2-11
AACCCTTTAAAAGTGGTTTTTTTTAAGG
20._PA_150_[PER]
AC____CT____GG______________
21._PA_150_[PER]
AC____TT____GG______________
22._PA_150_[PER]
AC____TT____GG______________
23._PA_150_[PER]
AC____TT____GG______________
24._PA_150_[PER]
AC____TT____GG______________
25._GC-01-034-2-11
ACCCCTTTAAAAGGAGTTTTGTTTACCG
26._PA_150_[PER]
AA____TT____GT______________
27._PA_150_[PER]
AA____TT____GT______________
28._PA_150_[PER]
AA____TT____GT______________
29._PA_150_[PER]
AA____TT____GT______________
30._PA_150_[PER]
AA____TT____GT______________
31._PA_150_[PER]
AA____CT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGGGCCAGCCGGAAAGAGX_XX_X
1._RUQ_1731
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
2._PA_150_[PER]_Fld#_173_Plt#_1
AGCCGGGGGGCCAGCCGGAAGGAGX_XX_X
3._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
4._GC-01-34-2-11
GGCCAGGGGGCCAAGGGGAAAGGGX_XX_X
5._RUQ_1731
__GG____GG____________AGX_XX_X
6._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
7._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
8._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
9._GC-01-034-2-11
__GGCCCCGGCCCTCCCCAACTAGX_XX_X
10._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
11._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
12._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
13._PA_150_[PER]
__GGCC______CTCC__AACTAGX_XX_X
14._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
15._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
16._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
17._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
18._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
19._GC-01-034-2-11
__GGCTCCGGCCTTGGCCAACTGGX_XX_X
20._PA_150_[PER]
__CCCC______CCCG__AACTAAX_XX_X
21._PA_150_[PER]
__CGCT______CTCC__ATCTAGX_XX_X
22._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
23._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
24._PA_150_[PER]
__GGCC______CTCC__AACCAGX_XX_X
25._GC-01-034-2-11
AACGCTCGAGCCCTCCCCATCTAGX_XX_X
26._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
27._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
28._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
29._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
30._PA_150_[PER]
__GGCT______TTGG__AACTGGX_XX_X
31._PA_150_[PER]
__CCCT______CTGG__AACTAGX_XX_X

Input profile: PA_150_[PER] GC-01-34-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

1._PA_150_[PER] RUQ_1731

88.4 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

88.3 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

3._PA_150_[PER] GC-01-34-2-11

75 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._PA_150_[PER] GC-01-34-2-11

75 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._PA_150_[PER] RUQ_1731

50 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

6._PA_150_[PER] GC-01-034-2-11

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

10._PA_150_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

11._PA_150_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

12._PA_150_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

13._PA_150_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

14._PA_150_[PER]

39.7 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

15._PA_150_[PER] GC-01-034-2-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

19._PA_150_[PER] GC-01-034-2-11

39.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

20._PA_150_[PER]

38.7 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

21._PA_150_[PER]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

22._PA_150_[PER]

38.6 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

38.6 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

38.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

25._PA_150_[PER] GC-01-034-2-11

38.3 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

26._PA_150_[PER]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

27._PA_150_[PER]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

28._PA_150_[PER]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

29._PA_150_[PER]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

30._PA_150_[PER]

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

31._PA_150_[PER]

34.3 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998