SNP Profiles of SCA 3 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	GG	CC	AA	GG	GG	CC	AT	AA	GG	GG	GG	AA
1._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
2._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
3._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
4._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
5._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
6._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
7._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
8._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
9._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
10._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
11._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
12._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
13._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
14._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
15._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
16._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
17._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	__	CC	CC	TT
18._GC-08-169-4-12	CC	CC	GG	CC	TT	CC	GG	GG	AT	TT	GG	CC	CC	TT
19._SCA_3	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	GG	CC	AA	GG	GG	AC	AG	GG	AA	CC	AA
1._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
2._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
3._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
4._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
5._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
6._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
7._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
8._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
9._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
10._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT
11._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
12._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
13._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
14._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
15._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
16._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
17._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
18._GC-08-169-4-12	TT	GT	TT	__	CC	AA	CC	CC	AC	CT	CC	AA	GG	TT
19._SCA_3	__	GT	TT	__	CC	__	CC	__	AC	CT	CC	AA	GG	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	CC	CG	AA	AG	AG	CG	AA	AA	AA	AA	GG
1._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
2._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
3._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
4._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
5._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
6._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
7._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
8._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
9._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
10._SCA_3	CC	__	__	CC	CG	AA	__	CT	CG	__	__	AA	__	__
11._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
12._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
13._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
14._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
15._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
16._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
17._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
18._GC-08-169-4-12	CC	TT	GG	CC	CG	AA	AG	CT	CG	TT	TT	AA	AA	GG
19._SCA_3	CC	__	__	CC	__	AA	__	CT	CG	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	AA	AG	AA	AA	CC	GG	AC	AA	AA	CC	GG	CC
1._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
2._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
3._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
4._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
5._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
6._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
7._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
8._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
9._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
10._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC
11._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
12._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
13._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
14._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
15._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
16._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
17._GC-08-169-4-12	AA	CC	AA	AG	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
18._GC-08-169-4-12	AA	CC	AA	__	AA	AA	GG	__	AC	AA	AA	GG	GG	CC
19._SCA_3	AA	__	__	__	AA	__	__	__	__	AA	__	GG	__	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	GG	AA	AA	AA	CC	AA	AA	AA	CC	AA	CC	GG
1._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	__	CC	CC
2._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
3._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
4._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
5._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
6._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
7._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
8._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
9._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
10._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
11._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
12._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
13._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
14._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
15._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
16._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
17._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
18._GC-08-169-4-12	CC	CC	CC	TT	AA	AA	GG	AA	TT	TT	GG	TT	CC	CC
19._SCA_3	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AA	GG	AA	GG	AG	CC	AG	CC	GG	TT	GG	AA	X_X	X_X
1._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
2._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
3._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
4._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
5._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
6._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
7._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
8._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
9._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
10._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X
11._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
12._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
13._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
14._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
15._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
16._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
17._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
18._GC-08-169-4-12	AA	CC	TT	CC	AG	CC	CT	CC	CC	TT	CC	AA	X_X	X_X
19._SCA_3	__	CC	TT	__	__	__	CT	CC	__	TT	CC	AA	X_X	X_X

Input profile: SCA_3 GC-01-123-6-20

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1

Notes: MCCS_Structure_refs_above_0.9membership

1._SCA_3 GC-08-169-4-12

51.9 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 10

Dapeng Zhang, 2016

3._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 3 > FP

Dapeng Zhang, 2016

4._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 2 > FP

Dapeng Zhang, 2016

5._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 1 > FP

Dapeng Zhang, 2016

6._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 11

Dapeng Zhang, 2016

7._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 9

Dapeng Zhang, 2016

8._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 7

Dapeng Zhang, 2016

9._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 5

Dapeng Zhang, 2016

10._SCA_3

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8412 4

Dapeng Zhang, 2016

11._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

12._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

13._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

16._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._SCA_3 GC-08-169-4-12

50.6 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._SCA_3 GC-08-169-4-12

50.6 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

19._SCA_3

50 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A26 T8

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998