SNP Profiles of SCA-3   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAGGGGCCATAAGGGGGGAA
1._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
2._SCA_3
__________CCGG__AT__________
3._SCA_3
__________CCGG__AT__________
4._SCA_3
__________CCGG__AT__________
5._SCA_3
__________CCGG__AT__________
6._SCA_3
__________CCGG__AT__________
7._SCA_3
__________CCGG__AT__________
8._SCA_3
__________CCGG__AT__________
9._SCA_3
__________CCGG__AT__________
10._SCA_3
__________CCGG__AT__________
11._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
12._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
13._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
14._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
15._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
16._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
17._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTT__CCCCTT
18._GC-08-169-4-12
CCCCGGCCTTCCGGGGATTTGGCCCCTT
19._SCA_3
__________CCGG__AT__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAGGCCAAGGGGACAGGGAACCAA
1._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
2._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
3._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
4._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
5._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
6._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
7._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
8._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
9._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
10._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
11._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
12._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
13._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
14._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
15._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
16._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
17._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
18._GC-08-169-4-12
TTGTTT__CCAACCCCACCTCCAAGGTT
19._SCA_3
__GTTT__CC__CC__ACCTCCAAGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCCGAAAGAGCGAAAAAAAAGG
1._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
2._SCA_3
CC____CCCGAA__CTCG____AA____
3._SCA_3
CC____CCCGAA__CTCG____AA____
4._SCA_3
CC____CCCGAA__CTCG____AA____
5._SCA_3
CC____CCCGAA__CTCG____AA____
6._SCA_3
CC____CCCGAA__CTCG____AA____
7._SCA_3
CC____CCCGAA__CTCG____AA____
8._SCA_3
CC____CCCGAA__CTCG____AA____
9._SCA_3
CC____CCCGAA__CTCG____AA____
10._SCA_3
CC____CCCGAA__CTCG____AA____
11._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
12._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
13._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
14._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
15._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
16._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
17._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
18._GC-08-169-4-12
CCTTGGCCCGAAAGCTCGTTTTAAAAGG
19._SCA_3
CC____CC__AA__CTCG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAAGAAAACCGGACAAAACCGGCC
1._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
2._SCA_3
AA______AA________AA__GG__CC
3._SCA_3
AA______AA________AA__GG__CC
4._SCA_3
AA______AA________AA__GG__CC
5._SCA_3
AA______AA________AA__GG__CC
6._SCA_3
AA______AA________AA__GG__CC
7._SCA_3
AA______AA________AA__GG__CC
8._SCA_3
AA______AA________AA__GG__CC
9._SCA_3
AA______AA________AA__GG__CC
10._SCA_3
AA______AA________AA__GG__CC
11._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
12._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
13._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
14._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
15._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
16._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
17._GC-08-169-4-12
AACCAAAGAAAAGG__ACAAAAGGGGCC
18._GC-08-169-4-12
AACCAA__AAAAGG__ACAAAAGGGGCC
19._SCA_3
AA______AA________AA__GG__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGAAAAAACCAAAAAACCAACCGG
1._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGG__CCCC
2._SCA_3
CC____TT____GG______________
3._SCA_3
CC____TT____GG______________
4._SCA_3
CC____TT____GG______________
5._SCA_3
CC____TT____GG______________
6._SCA_3
CC____TT____GG______________
7._SCA_3
CC____TT____GG______________
8._SCA_3
CC____TT____GG______________
9._SCA_3
CC____TT____GG______________
10._SCA_3
CC____TT____GG______________
11._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
12._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
13._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
14._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
15._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
16._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
17._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
18._GC-08-169-4-12
CCCCCCTTAAAAGGAATTTTGGTTCCCC
19._SCA_3
CC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AAGGAAGGAGCCAGCCGGTTGGAAX_XX_X
1._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
2._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
3._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
4._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
5._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
6._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
7._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
8._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
9._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
10._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X
11._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
12._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
13._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
14._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
15._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
16._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
17._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
18._GC-08-169-4-12
AACCTTCCAGCCCTCCCCTTCCAAX_XX_X
19._SCA_3
__CCTT______CTCC__TTCCAAX_XX_X

Input profile: SCA_3 GC-01-123-6-20

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SCA_3 GC-08-169-4-12

51.9 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 10
 Dapeng Zhang, 2016

3._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 3 > FP
 Dapeng Zhang, 2016

4._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 2 > FP
 Dapeng Zhang, 2016

5._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 1 > FP
 Dapeng Zhang, 2016

6._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 11
 Dapeng Zhang, 2016

7._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 9
 Dapeng Zhang, 2016

8._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 7
 Dapeng Zhang, 2016

9._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 5
 Dapeng Zhang, 2016

10._SCA_3

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8412 4
 Dapeng Zhang, 2016

11._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

16._SCA_3 GC-08-169-4-12

51.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._SCA_3 GC-08-169-4-12

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._SCA_3 GC-08-169-4-12

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

19._SCA_3

50 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A26 T8
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998