SNP Profiles of LCT_EEN_46   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAAAAAAGGAACCAAGGAAAAAACC
1._SIAL_169___
__________CCAA__AA__________
2._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
3._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
4._SIAL_169___
__________CCAA__AA__________
5._SIAL_169___
__________CCAA__AA__________
6._SIAL_169___
__________CCAA__AA__________
7._SIAL_169___
__________CCAA__AA__________
8._SIAL_169___
__________CCAA__AA__________
9._SIAL_169___
__________CCAA__AA__________
10._SIAL_169___
__________CCAA__AA__________
11._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
12._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
13._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
14._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
15._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
16._SIAL_169___
CCACAAAATTCCAAGGAACCAATTTTGG
17._SIAL_169___
__________CCAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAAAAGGAAAAACGGCCAGAAGG
1._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
2._SIAL_169___
CTTTCCTTAAGGTT__ACCCGGAGTTCC
3._SIAL_169___
CTTTCCTTAAGGTT__ACCCGGAGTTCC
4._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
5._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
6._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
7._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
8._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
9._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
10._SIAL_169___
__TTCC__AA__TT__ACCCGGAGTTCC
11._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
12._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
13._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
14._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
15._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
16._SIAL_169___
CTTTCCTTAAGGTTTTACCCGGAGTTCC
17._SIAL_169___
__TTCC__AA__TT__AATTGGAGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTGGGGAA
1._SIAL_169___
TT____AACCAA__CCGG________AA
2._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
3._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
4._SIAL_169___
TT____AACCAA__CCGG________AA
5._SIAL_169___
TT____AACCAA__CCGG________AA
6._SIAL_169___
TT____AACCAA__CCGG________AA
7._SIAL_169___
TT____AACCAA__CCGG________AA
8._SIAL_169___
TT____AACCAA__CCGG________AA
9._SIAL_169___
TT____AACCAA__CCGG________AA
10._SIAL_169___
TT____AACCAA__CCGG________AA
11._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
12._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
13._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
14._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
15._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
16._SIAL_169___
TTAAGGAACCAAGGCCGGGGAAGGGGAA
17._SIAL_169___
TT____AACCAA__CCGG________AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGTTGGAGCCCCGGAAAACGAC
1._SIAL_169___
______GG________CC__TT__CGAC
2._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
3._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
4._SIAL_169___
______GG________CC__TT__CGAC
5._SIAL_169___
______GG________CC__TT__CGAC
6._SIAL_169___
______GG________CC__TT__CGAC
7._SIAL_169___
______GG________CC__TT__CGAC
8._SIAL_169___
______GG________CC__TT__CGAC
9._SIAL_169___
______GG________CC__TT__CGAC
10._SIAL_169___
______GG________CC__TT__CGAC
11._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
12._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
13._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
14._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
15._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
16._SIAL_169___
CTGGGGGGTTCC__CCCCGGTTAACGAC
17._SIAL_169___
______GG________CC__TT__GGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAAAAGGAACCGGAAAAACAAAACCGG
1._SIAL_169___
__________GG________________
2._SIAL_169___
CCTT__AAAAGGGGTTTTGTTTAAGG__
3._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
4._SIAL_169___
____TT____GG________________
5._SIAL_169___
____TT____GG________________
6._SIAL_169___
____TT____GG________________
7._SIAL_169___
____TT____GG________________
8._SIAL_169___
____TT____GG________________
9._SIAL_169___
____TT____GG________________
10._SIAL_169___
____TT____GG________________
11._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
12._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
13._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
14._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
15._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
16._SIAL_169___
CCTTTTAAAAGGGGTTTTGTTTAAGG__
17._SIAL_169___
____TT____GG________________
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGAACCAACGGGAAAAGGX_XX_XX_X
1._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
2._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
3._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
4._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
5._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
6._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
7._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
8._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
9._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
10._SIAL_169___
GGCC______TTCG__AATTGGX_XX_XX_X
11._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
12._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
13._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
14._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
15._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
16._SIAL_169___
GGCCCCAACCTTCGCCAATTGGX_XX_XX_X
17._SIAL_169___
GGCC______TTGG__AATTGGX_XX_XX_X

Input profile: SIAL_169 GC-01-41-2-18

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SIAL_169

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 9
 Dapeng Zhang, 2016

2._SIAL_169 GC-01-041-2-18

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._SIAL_169 GC-01-041-2-18

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 8 > FP
 Dapeng Zhang, 2016

5._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 2 > FP
 Dapeng Zhang, 2016

6._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 13 > F
 Dapeng Zhang, 2016

7._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 12 > F
 Dapeng Zhang, 2016

8._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 10
 Dapeng Zhang, 2016

9._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 6
 Dapeng Zhang, 2016

10._SIAL_169

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1214 4
 Dapeng Zhang, 2016

11._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

13._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

14._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._SIAL_169 GC-01-041-2-18

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._SIAL_169

41.2 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998