SNP Profiles of U 12 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGCCAAAGGGCCATAGGGAAAGAC
1._GC-02-4-1-4
CCCCGGCCAAGGGGCCAAAAGGGGGGAA
2._U_12_[PER]
__________CTGG__AT__________
3._GC-08-184-4-27
CCCCGGCCTTCCGGGGAATTGGCCCCTT
4._GC-08-185-4-28
CCCCGGCCTTCCGGGGAATTGGCCCCTT
5._GC-08-185-4-28
CCCCGGCCTTCCGGGGAATTGGCCCCTT
6._GC-08-185-4-28
CCCCGGCCTTCCGGGGAATTGGCCCCTT
7._GC-08-185-4-28
CCCCGGCCTTCCGGGGAATTGGCCCCTT
8._GC-08-184-4-27
CCCCGGCCTTCCGGGGAATTGGCCCCTT
9._GC-08-184-4-27
CCCCGGCCTTCCGGGGAATTGGCCCCTT
10._GC-08-184-4-27
CCCCGGCCTTCCGGGGAATTGGCCCCTT
11._GC-08-184-4-27
CCCCGGCCTTCCGGGGAATTGGCCCCTT
12._GC-08-185-4-28
CCCCGGCCTTCCGGGG__TTGGCCCCTT
13._U_12_[PER]
__________CCGG__AA__________
14._U_12_[PER]
__________CCGG__AA__________
15._U_12_[PER]
__________CCGG__AA__________
16._U_12_[PER]
__________CCGG__AA__________
17._U_12_[PER]
__________CCGG__AA__________
18._U_12_[PER]
__________CCGG__AA__________
19._U_12_[PER]
__________CCGG__AA__________
20._U_12_[PER]
__________CCGG__AA__________
21._U_12_[PER]
__________CCGG__AA__________
22._U_12_[PER]
__________CCGG______________
23._U_12_[PER]
__________CCGG______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAGAACCAGAGGGCCAACGAAACAG
1._GC-02-4-1-4
AAAAAAGGCCGGGGGGACAAGGGGCCAA
2._U_12_[PER]
__GTCT__CC__CT__CCTTCGAGGTCT
3._GC-08-184-4-27
TT__TT__CCGGCCCCACTTCCGGGGTT
4._GC-08-185-4-28
TTTTTT__CCGGCCCCACTTCCGGGGTT
5._GC-08-185-4-28
TTTTTT__CCGGCCCCACTTCCGGGGTT
6._GC-08-185-4-28
TTTTTT__CCGGCCCCACTTCCGGGGTT
7._GC-08-185-4-28
TTTTTT__CCGGCCCCACTTCCGGGGTT
8._GC-08-184-4-27
TTTTTT__CCGGCCCCACTTCCGGGGTT
9._GC-08-184-4-27
TTTTTT__CCGGCCCCACTTCCGGGGTT
10._GC-08-184-4-27
TTTTTT__CCGGCCCCACTTCCGGGGTT
11._GC-08-184-4-27
TTTTTT__CCGGCCCCACTTCCGGGGTT
12._GC-08-185-4-28
TTTTTT__CCGGCCCCACTTCCGGGGTT
13._U_12_[PER]
____TT__CC__CC__ACTTCCGGGGTT
14._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
15._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
16._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
17._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
18._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
19._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
20._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
21._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
22._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
23._U_12_[PER]
__TTTT__CC__CC__ACTTCCGGGGTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCGGAGGGAGCGACATATAAGG
1._GC-02-4-1-4
GGAAGGCCGGAAGGAGGGAAAAAAAAGG
2._U_12_[PER]
CC____CCCCAG__TTCG____AT____
3._GC-08-184-4-27
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
4._GC-08-185-4-28
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
5._GC-08-185-4-28
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
6._GC-08-185-4-28
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
7._GC-08-185-4-28
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
8._GC-08-184-4-27
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
9._GC-08-184-4-27
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
10._GC-08-184-4-27
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
11._GC-08-184-4-27
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
12._GC-08-185-4-28
CCTTGGCCCCAAGGCTGGTTTTAAAAGG
13._U_12_[PER]
CC____CCCCAA__CTGG____AA____
14._U_12_[PER]
CC____CCCCAA__CTGG____AA____
15._U_12_[PER]
CC____CCCCAA__CTGG____AA____
16._U_12_[PER]
CC____CCCCAA__CTGG____AA____
17._U_12_[PER]
CC____CCCCAA__CTGG____AA____
18._U_12_[PER]
CC____CCCCAA__CTGG____AA____
19._U_12_[PER]
CC____CCCCAA__CTGG____AA____
20._U_12_[PER]
CC____CCCCAA__CTGG____AA____
21._U_12_[PER]
CC____CCCCAA__CTGG____AA____
22._U_12_[PER]
CC____CCCCAA__CTGG____AA____
23._U_12_[PER]
CC____CCCCAA__CTGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATGGAGAGAAATGGAGAAACAAACGGGG
1._GC-02-4-1-4
AAGGAAAAAGAACCGGCCACAGCCGGCG
2._U_12_[PER]
AT______AA________AC__GT__GG
3._GC-08-184-4-27
AACCAAAAAGAAGG__CCACAGGGGGCG
4._GC-08-185-4-28
AACCAAAAAGAAGG__CCACAGGGGGCG
5._GC-08-185-4-28
AACCAAAAAGAAGG__CCACAGGGGGCG
6._GC-08-185-4-28
AACCAAAAAGAAGG__CCACAGGGGGCG
7._GC-08-185-4-28
AACCAAAAAGAAGG__CCACAGGGGGCG
8._GC-08-184-4-27
AACCAAAAAGAAGG__CCACAGGGGGCG
9._GC-08-184-4-27
AACCAAAAAGAAGG__CCACAGGGGGCG
10._GC-08-184-4-27
AACCAAAAAGAAGG__CCACAGGGGGCG
11._GC-08-184-4-27
AACCAAAAAGAAGG__CCACAGGGGGCG
12._GC-08-185-4-28
AACCAAAAAGAAGG__CCACAGGGGGCG
13._U_12_[PER]
AA______AG________AC__GG__CG
14._U_12_[PER]
AA______AG________AC__GG__CG
15._U_12_[PER]
AA______AG________AC__GG__CG
16._U_12_[PER]
AA______AG________AC__GG__CG
17._U_12_[PER]
AA______AG________AC__GG__CG
18._U_12_[PER]
AA______AG________AC__GG__CG
19._U_12_[PER]
AA______AG________AC__GG__CG
20._U_12_[PER]
AA______AG________AC__GG__CG
21._U_12_[PER]
AA______AG________AC__GG__CG
22._U_12_[PER]
AA______AG________AC__GG__CG
23._U_12_[PER]
AA______AG________AC__GG__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGAGAAAAACGGAAAAACAACCCG
1._GC-02-4-1-4
CCGGGGAAAAAACCAAAAAACCAACCGG
2._U_12_[PER]
AC____CT____GT______________
3._GC-08-184-4-27
CCCCCCTTAAAAGGAATTTTGGTTCCCC
4._GC-08-185-4-28
CCCCCCTTAAAAGGAATTTTGGTTCCCC
5._GC-08-185-4-28
CCCCCCTTAAAAGGAATTTTGGTTCCCC
6._GC-08-185-4-28
CCCCCCTTAAAAGGAATTTTGGTTCCCC
7._GC-08-185-4-28
CCCCCCTTAAAAGGAATTTTGGTTCCCC
8._GC-08-184-4-27
CCCCCCTTAAAAGGAATTTTGGTTCCCC
9._GC-08-184-4-27
CCCCCCTTAAAAGGAATTTTGGTTCCCC
10._GC-08-184-4-27
CCCCCCTTAAAAGGAATTTTGGTTCCCC
11._GC-08-184-4-27
CCCCCCTTAAAAGGAATTTTGGTTCCCC
12._GC-08-185-4-28
CCCCCCTTAAAAGGAATTTTGGTTCCCC
13._U_12_[PER]
CC____TT____GG______________
14._U_12_[PER]
CC____TT____GG______________
15._U_12_[PER]
CC____TT____GG______________
16._U_12_[PER]
CC____TT____GG______________
17._U_12_[PER]
CC____TT____GG______________
18._U_12_[PER]
CC____TT____GG______________
19._U_12_[PER]
CC____TT____GG______________
20._U_12_[PER]
CC____TT____GG______________
21._U_12_[PER]
CC____TT____GG______________
22._U_12_[PER]
CC____TT____GG______________
23._U_12_[PER]
CC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGAGGGGGACGGCGGGATAGAGX_XX_X
1._GC-02-4-1-4
AAGGAAGGGGCCAGCCGGTTGGAAX_XX_X
2._U_12_[PER]
__CGCT______CCCG__ATCTAGX_XX_X
3._GC-08-184-4-27
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
4._GC-08-185-4-28
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
5._GC-08-185-4-28
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
6._GC-08-185-4-28
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
7._GC-08-185-4-28
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
8._GC-08-184-4-27
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
9._GC-08-184-4-27
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
10._GC-08-184-4-27
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
11._GC-08-184-4-27
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
12._GC-08-185-4-28
AACCTTCCGGCCCTCCCCTTCCAAX_XX_X
13._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
14._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
15._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
16._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
17._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
18._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
19._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
20._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
21._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
22._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X
23._U_12_[PER]
__CCTT______CTCC__TTCCAAX_XX_X

Input profile: U_12_[PER] U_12_Fld#_179_Plt#_5

 
USDA-TARS, United States of America
Location: Field: 179, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

1._U_12_[PER] GC-02-4-1-4

65.9 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._U_12_[PER]

52.9 %
35 shared markers

 Dapeng Zhang, 2016

3._U_12_[PER] GC-08-184-4-27

36.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._U_12_[PER] GC-08-185-4-28

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._U_12_[PER] GC-08-185-4-28

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._U_12_[PER] GC-08-185-4-28

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._U_12_[PER] GC-08-185-4-28

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._U_12_[PER] GC-08-184-4-27

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._U_12_[PER] GC-08-184-4-27

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._U_12_[PER] GC-08-184-4-27

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._U_12_[PER] GC-08-184-4-27

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._U_12_[PER] GC-08-185-4-28

36.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._U_12_[PER]

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 4
 Dapeng Zhang, 2016

14._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 5
 Dapeng Zhang, 2016

15._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 4
 Dapeng Zhang, 2016

16._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 3
 Dapeng Zhang, 2016

17._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 2
 Dapeng Zhang, 2016

18._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 7
 Dapeng Zhang, 2016

19._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 5
 Dapeng Zhang, 2016

20._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 2
 Dapeng Zhang, 2016

21._U_12_[PER]

31.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8427 1
 Dapeng Zhang, 2016

22._U_12_[PER]

30.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8428 7
 Dapeng Zhang, 2016

23._U_12_[PER]

30.9 %
34 shared markers

Universidad Nacional Agraria de la Selva (UNAS), Peru
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998