SNP Profiles of ICS 48 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	CC	AG	AC	AA	GG	AG	CC	AT	AG	GG	AG	AG	AC
1._RUQ_146	AC	AC	AG	AA	AG	AG	AA	AC	AA	GG	AG	AA	AA	AC
2._RUQ_146	__	__	__	__	__	__	AA	__	__	__	__	__	__	__
3._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
4._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
5._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
6._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
7._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
8._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
9._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
10._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
11._RUQ_146	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
12._ICS_48	__	__	__	__	__	CT	AA	__	AT	__	__	__	__	__
13._GC-05-120-3-22	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
14._GC-05-078-2-29	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
15._GC-05-078-2-29	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
16._GC-05-078-2-29	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
17._GC-05-120-3-22	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
18._GC-05-120-3-22	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
19._GC-05-120-3-22	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
20._GC-05-078-2-29	AC	AC	AG	AA	CT	CT	AA	GT	AA	CC	AG	TT	TT	GT
21._ICS_48	__	__	__	__	__	CT	AA	__	AA	__	__	__	__	__
22._GC-05-078-2-29	CC	AC	AA	AA	TT	CC	AA	GG	AA	CC	AG	TT	TT	GG
23._RUQ_146	__	__	__	__	__	CT	__	GT	__	__	AG	__	__	__
24._ICS_48	__	__	__	__	__	CC	AA	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	AG	AA	AC	GG	AG	AG	CC	AG	CG	AG	AC	AG
1._RUQ_146	AG	AA	GG	AG	AA	GG	AA	AG	AC	AG	CC	AG	AC	AG
2._RUQ_146	__	GT	__	__	__	__	__	__	AC	__	CG	__	__	__
3._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
4._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
5._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
6._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
7._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
8._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
9._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
10._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
11._RUQ_146	__	GT	CC	__	AA	__	TT	__	AC	CT	CG	AG	GT	CT
12._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	GG	AG	GT	CT
13._GC-05-120-3-22	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
14._GC-05-078-2-29	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
15._GC-05-078-2-29	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
16._GC-05-078-2-29	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
17._GC-05-120-3-22	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
18._GC-05-120-3-22	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
19._GC-05-120-3-22	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
20._GC-05-078-2-29	CT	GT	CC	TT	AA	GG	TT	CT	AC	CT	CG	AG	GT	CT
21._ICS_48	__	GT	CC	__	AA	__	TT	__	AC	CT	GG	AG	GT	CT
22._GC-05-078-2-29	CC	TT	CC	TT	AA	GG	TT	TT	CC	CT	GG	AA	TT	CC
23._RUQ_146	__	GT	__	CT	__	__	__	CT	AC	CT	CG	AG	GT	CT
24._ICS_48	__	TT	CC	__	AA	__	TT	__	CC	CT	GG	AA	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	TT	GG	AC	GG	AA	GG	AG	GG	AC	TT	AT	GG	GG
1._RUQ_146	AG	AT	AG	AC	CG	AG	GG	AG	GG	CC	AT	AT	AG	AG
2._RUQ_146	__	__	__	__	__	AG	__	__	__	__	__	__	AG	__
3._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
4._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
5._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
6._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
7._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
8._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
9._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
10._ICS_48	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
11._RUQ_146	CT	__	__	AC	CG	AG	__	CT	GG	__	__	AT	__	__
12._ICS_48	CT	__	__	AC	__	AG	__	CT	GG	__	__	AT	__	__
13._GC-05-120-3-22	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
14._GC-05-078-2-29	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
15._GC-05-078-2-29	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
16._GC-05-078-2-29	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
17._GC-05-120-3-22	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
18._GC-05-120-3-22	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
19._GC-05-120-3-22	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
20._GC-05-078-2-29	CT	AT	AG	AC	CG	AG	GG	CT	GG	GG	AT	AT	AG	AG
21._ICS_48	CT	__	__	AC	GG	AG	__	CT	GG	__	__	AT	__	__
22._GC-05-078-2-29	TT	AA	GG	AA	CC	AG	GG	CT	GG	GG	AT	TT	GG	GG
23._RUQ_146	__	__	AG	AC	CG	AG	__	CT	__	__	__	__	AG	AG
24._ICS_48	TT	__	__	AA	CC	AG	__	CT	GG	__	__	TT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	AG	AG	GG	AT	GG	AG	CC	AC	AG	AC	AG	CC
1._RUQ_146	AT	AG	AG	AG	GG	AT	CG	AG	CC	CC	GG	AC	AA	CG
2._RUQ_146	__	__	__	__	__	__	__	__	__	CC	__	__	__	CG
3._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
4._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
5._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
6._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
7._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
8._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
9._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
10._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
11._RUQ_146	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
12._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
13._GC-05-120-3-22	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
14._GC-05-078-2-29	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
15._GC-05-078-2-29	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
16._GC-05-078-2-29	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
17._GC-05-120-3-22	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
18._GC-05-120-3-22	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
19._GC-05-120-3-22	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	AA	CG
20._GC-05-078-2-29	AT	CT	AG	AG	GG	AT	CG	__	CC	CC	GG	GT	__	CG
21._ICS_48	AT	__	__	__	GG	__	__	__	__	CC	__	GT	__	CG
22._GC-05-078-2-29	AA	TT	GG	GG	GG	AT	CC	__	CC	CC	GG	TT	AA	CG
23._RUQ_146	AT	__	__	__	__	__	CG	__	__	CC	__	GT	__	GG
24._ICS_48	AA	__	__	__	GG	__	__	__	__	CC	__	TT	__	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	AG	AA	AG	AA	CC	AG	AA	AA	AC	AA	AC	CG
1._RUQ_146	AC	AG	GG	AG	AA	AG	AA	AG	AG	AC	CC	AC	AC	CC
2._RUQ_146	AC	__	CC	__	__	__	TT	AG	__	__	__	__	AC	TT
3._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
4._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
5._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
6._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
7._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
8._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
9._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
10._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
11._RUQ_146	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
12._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
13._GC-05-120-3-22	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
14._GC-05-078-2-29	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
15._GC-05-078-2-29	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
16._GC-05-078-2-29	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
17._GC-05-120-3-22	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
18._GC-05-120-3-22	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
19._GC-05-120-3-22	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
20._GC-05-078-2-29	AC	CT	CC	CT	AG	AG	TT	AG	CT	GT	GG	GT	AC	GG
21._ICS_48	AC	__	__	CT	__	__	TT	__	__	__	__	__	__	__
22._GC-05-078-2-29	CC	CC	TT	TT	AA	AA	GT	GG	TT	TT	TT	TT	CC	GG
23._RUQ_146	AA	__	CC	CT	__	__	TT	AG	CT	__	__	GT	AC	__
24._ICS_48	CC	__	__	TT	__	__	GT	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	CC	GG	GG	AA	CC	AG	GG	AG	AT	AG	AG	X_X	X_X
1._RUQ_146	AG	CG	GG	GG	GG	AC	AA	GG	AG	AA	AG	AA	X_X	X_X
2._RUQ_146	__	CG	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X
3._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
4._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
5._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
6._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
7._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
8._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
9._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
10._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
11._RUQ_146	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
12._ICS_48	__	CG	CC	__	__	__	TT	GG	__	AA	CT	AA	X_X	X_X
13._GC-05-120-3-22	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
14._GC-05-078-2-29	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
15._GC-05-078-2-29	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
16._GC-05-078-2-29	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
17._GC-05-120-3-22	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
18._GC-05-120-3-22	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
19._GC-05-120-3-22	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
20._GC-05-078-2-29	AA	CG	CC	CC	GG	AC	TT	GG	CT	AA	CT	AA	X_X	X_X
21._ICS_48	__	CG	CC	__	__	__	TT	CG	__	AA	CT	AA	X_X	X_X
22._GC-05-078-2-29	__	GG	CC	CC	AG	CC	TT	GG	CC	AA	TT	AA	X_X	X_X
23._RUQ_146	__	CG	CC	__	GG	AC	__	__	__	__	__	AA	X_X	X_X
24._ICS_48	__	GG	CC	__	__	__	TT	GG	__	AA	TT	AA	X_X	X_X

Input profile: ICS_48 ICS_48_Fld#_105_Plt#_2

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USDA-TARS, United States of America

Location: Field: 105, Tree: 2

1._ICS_48 RUQ_146

69.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._ICS_48 RUQ_146

47.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

3._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 3

Dapeng Zhang, 2016

4._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 4

Dapeng Zhang, 2016

5._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 5

Dapeng Zhang, 2016

6._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 1 > FP

Dapeng Zhang, 2016

7._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 1

Dapeng Zhang, 2016

8._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 4

Dapeng Zhang, 2016

9._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 2 > FP

Dapeng Zhang, 2016

10._ICS_48

41.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5322 3 > FP

Dapeng Zhang, 2016

11._ICS_48 RUQ_146

41.4 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._ICS_48

41.2 %
34 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

13._ICS_48 GC-05-120-3-22

40.7 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._ICS_48 GC-05-078-2-29

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._ICS_48 GC-05-078-2-29

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._ICS_48 GC-05-078-2-29

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

17._ICS_48 GC-05-120-3-22

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

18._ICS_48 GC-05-120-3-22

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

19._ICS_48 GC-05-120-3-22

40.7 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._ICS_48 GC-05-078-2-29

40.6 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

21._ICS_48

40 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

22._ICS_48 GC-05-078-2-29

34.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

23._ICS_48 RUQ_146

33.8 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

24._ICS_48

31.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5229 2 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998