SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAACCAAGGGGCCAAGGGGAAAAAA
1._RUQ_1731
AACCAACCAAGGGGCCAAGGGGAAAAAA
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
4._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
5._RUQ_1731
____________GG______________
6._PA_150_[PER]
__________CCGG__AA__________
7._PA_150_[PER]
__________CCGG__AA__________
8._PA_150_[PER]
__________CCGG__AA__________
9._PA_150_[PER]
__________CCGG__AA__________
10._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
11._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
12._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
13._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
16._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
17._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
18._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
19._PA_150_[PER]
__________TTGG__AA__________
20._PA_150_[PER]
__________CCAG__AA__________
21._PA_150_[PER]
__________CCAG__AA__________
22._PA_150_[PER]
__________CCAG__AA__________
23._PA_150_[PER]
__________CCAG__AA__________
24._PA_150_[PER]
__________TTGG__AA__________
25._PA_150_[PER]
__________TTGG__AA__________
26._PA_150_[PER]
__________TTGG__AA__________
27._PA_150_[PER]
__________TTGG__AA__________
28._PA_150_[PER]
__________CTGG__AA__________
29._PA_150_[PER]
__________CTGG______________
30._PA_150_[PER]
__________CTAG__AT__________
31._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAACGGAAGGACGGCCAGCCAG
1._RUQ_1731
AAAAAAAAACGGAAGGACGGCCAGCCAG
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCAG
3._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
4._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
5._RUQ_1731
__TT____________AC__GG______
6._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCT
7._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCT
8._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCT
9._PA_150_[PER]
__TTTT__AC__TT__ACCCGGAGGGCT
10._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
11._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
12._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
13._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
16._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
17._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
18._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
19._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
20._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCT
21._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCT
22._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCT
23._PA_150_[PER]
__TTCT__AC__TT__CCCCGGGGGGCT
24._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
25._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
26._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
27._PA_150_[PER]
__TTCT__AC__CT__ACTTCGAAGTTT
28._PA_150_[PER]
__TTTT__AA__TT__ACTTCCAAGGCC
29._PA_150_[PER]
__GTTT__CC______CCTTCGAGGG__
30._PA_150_[PER]
__GTCC__AC__CT__AACTCGAGGTCT
31._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATGGAAGGGGGGGGGGCCTTAAGGGGAA
1._RUQ_1731
ATGGAAGGGGGGGGGGCCTTAAGGGGAA
2._GC-01-34-2-11
TTGGACGGAGGGGGGGCCTTATGGGGAA
3._GC-01-34-2-11
TTGGACCGAGGGGGGGCCATATGGGGAA
4._GC-01-34-2-11
TTGGACCGAGGGGGGGCCATATGGGGAA
5._RUQ_1731
________GG____________GG____
6._PA_150_[PER]
____AA__GG__CCGG____AA____AA
7._PA_150_[PER]
____AACCGG__CCGG____AA____AA
8._PA_150_[PER]
____AACCGG__CCGG____AA____AA
9._PA_150_[PER]
____AACCGG__CCGG____AA____AA
10._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
11._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
12._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
13._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
14._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
15._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
16._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
17._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
18._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
19._PA_150_[PER]
____AACGAG__CCGG____AT____AA
20._PA_150_[PER]
____AACCAG__CCGG____AT____AA
21._PA_150_[PER]
____AACCAG__CCGG____AT____AA
22._PA_150_[PER]
____AACCAG__CCGG____AT____AA
23._PA_150_[PER]
____AACCAG__CCGG____AT____AA
24._PA_150_[PER]
____AACGAG__CCGG____AT____AA
25._PA_150_[PER]
____AACGAG__CCGG____AT____AA
26._PA_150_[PER]
____AACGAG__CCGG____AT____AA
27._PA_150_[PER]
____AACGAG__CCGG____AT____AA
28._PA_150_[PER]
____AACCAA__CTGG____TT____AA
29._PA_150_[PER]
____AC__AA__CCCC____TT____AA
30._PA_150_[PER]
____ACCCAA__CCCG____AT____AA
31._GC-01-034-2-11
ATGGACCCAAGGCCCGGTAAATAGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGAAGGGGCCACAAAAAGCGAC
1._RUQ_1731
AAGGGGGGAAGGGGCCACAAAAAGCGAC
2._GC-01-34-2-11
AAGGGGGGTTGGGGCCACAAACAGCGCC
3._GC-01-34-2-11
AAGGGGGGATGGAGCCACGGAAAGGGAA
4._GC-01-34-2-11
AAGGGGGGATGGAGCCACGGAAAGGGAA
5._RUQ_1731
________________AA______CGAC
6._PA_150_[PER]
______GG________AC__TT__CGAC
7._PA_150_[PER]
______GG________AC__TT__CGAC
8._PA_150_[PER]
______GG________AC__TT__CGAC
9._PA_150_[PER]
______GG________AC__TT__CGAC
10._GC-01-034-2-11
TTGGGGGGTTCC__CCACAAGTAGCGCC
11._GC-01-034-2-11
TTGGGGGGTTCC__CCACAAGTAGCGCC
12._GC-01-034-2-11
TTGGGGGGTTCC__CCACAAGTAGCGCC
13._GC-01-034-2-11
TTGGGGGGTTCC__CCACAAGTAGCGCC
14._GC-01-034-2-11
TTGGGGGGATCC__CCACGGTTAGGGAA
15._GC-01-034-2-11
TTGGGGGGATCC__CCACGGTTAGGGAA
16._GC-01-034-2-11
TTGGGGGGATCC__CCACGGTTAGGGAA
17._GC-01-034-2-11
TTGGGGGGATCC__CCACGGTTAGGGAA
18._GC-01-034-2-11
TTGGGGGGATCC__CCACGGTTAGGGAA
19._PA_150_[PER]
______GG________AC__TT__GGAA
20._PA_150_[PER]
______GG________AC__GT__CGCC
21._PA_150_[PER]
______GG________AC__GT__CGCC
22._PA_150_[PER]
______GG________AC__GT__CGCC
23._PA_150_[PER]
______GG________AC__GT__CGCC
24._PA_150_[PER]
______GG________AC__TT__GGAA
25._PA_150_[PER]
______GG________AC__TT__GGAA
26._PA_150_[PER]
______GG________AC__TT__GGAA
27._PA_150_[PER]
______GG________AC__TT__GGAA
28._PA_150_[PER]
______GG________CC__GT__GGAA
29._PA_150_[PER]
______GG________AC__GG__GGAC
30._PA_150_[PER]
______GG________AC__GT__CCAC
31._GC-01-034-2-11
CTAGAGGGATCG__ACACAGGTAGCCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGAGAAAAAACCAGAAAACCAAAAGGAG
1._RUQ_1731
GGAGAAAAAACCAGAAAACCAAAAGGAG
2._GC-01-34-2-11
GGAGAAAGAACCAGAAAACCAAAACGGG
3._GC-01-34-2-11
GGAGAAGGAAACGGAAAAAAAAAACCGG
4._GC-01-34-2-11
GGAGAAGGAAACGGAAAAAAAAAACCGG
5._RUQ_1731
__CT______GGAG________AATT__
6._PA_150_[PER]
____TT____GG________________
7._PA_150_[PER]
____TT____GG________________
8._PA_150_[PER]
____TT____GG________________
9._PA_150_[PER]
____TT____GG________________
10._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG__
11._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG__
12._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG__
13._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG__
14._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG__
15._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG__
16._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG__
17._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG__
18._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG__
19._PA_150_[PER]
____TT____GT________________
20._PA_150_[PER]
____TT____GG________________
21._PA_150_[PER]
____TT____GG________________
22._PA_150_[PER]
____TT____GG________________
23._PA_150_[PER]
____TT____GG________________
24._PA_150_[PER]
____TT____GT________________
25._PA_150_[PER]
____TT____GT________________
26._PA_150_[PER]
____TT____GT________________
27._PA_150_[PER]
____TT____GT________________
28._PA_150_[PER]
____CT____GG________________
29._PA_150_[PER]
____CT____GG________________
30._PA_150_[PER]
____TT____GG________________
31._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGTTTACCGAA
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCAGCCGGAAGGAGX_XX_XX_X
1._RUQ_1731
CCGGGGGGCCAGCCGGAAGGAGX_XX_XX_X
2._GC-01-34-2-11
CCGGGGGGCCAGCCGGAAAGAGX_XX_XX_X
3._GC-01-34-2-11
CCAGGGGGCCAAGGGGAAAGGGX_XX_XX_X
4._GC-01-34-2-11
CCAGGGGGCCAAGGGGAAAGGGX_XX_XX_X
5._RUQ_1731
GG____GG____________AGX_XX_XX_X
6._PA_150_[PER]
GGCC______CTCC__AACCAGX_XX_XX_X
7._PA_150_[PER]
GGCC______CTCC__AACCAGX_XX_XX_X
8._PA_150_[PER]
GGCC______CTCC__AACCAGX_XX_XX_X
9._PA_150_[PER]
GGCC______CTCC__AACCAGX_XX_XX_X
10._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
11._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
12._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
13._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
14._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
15._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
16._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
17._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
18._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
19._PA_150_[PER]
GGCT______TTGG__AACTGGX_XX_XX_X
20._PA_150_[PER]
GGCC______CTCC__AACTAGX_XX_XX_X
21._PA_150_[PER]
GGCC______CTCC__AACTAGX_XX_XX_X
22._PA_150_[PER]
GGCC______CTCC__AACTAGX_XX_XX_X
23._PA_150_[PER]
GGCC______CTCC__AACTAGX_XX_XX_X
24._PA_150_[PER]
GGCT______TTGG__AACTGGX_XX_XX_X
25._PA_150_[PER]
GGCT______TTGG__AACTGGX_XX_XX_X
26._PA_150_[PER]
GGCT______TTGG__AACTGGX_XX_XX_X
27._PA_150_[PER]
GGCT______TTGG__AACTGGX_XX_XX_X
28._PA_150_[PER]
CCCT______CTGG__AACTAGX_XX_XX_X
29._PA_150_[PER]
CCCC______CCCG__AACTAAX_XX_XX_X
30._PA_150_[PER]
CGCT______CTCC__ATCTAGX_XX_XX_X
31._GC-01-034-2-11
CGCTCGAGCCCTCCCCATCTAGX_XX_XX_X

Input profile: PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

 
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USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

1._PA_150_[PER] RUQ_1731

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

88.3 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] GC-01-34-2-11

71.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._PA_150_[PER] GC-01-34-2-11

71.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

6._PA_150_[PER]

51.5 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

7._PA_150_[PER]

50 %
34 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

8._PA_150_[PER]

50 %
34 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

9._PA_150_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

20._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

21._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

22._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

23._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

25._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

26._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

27._PA_150_[PER]

41.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

28._PA_150_[PER]

39.7 %
34 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

29._PA_150_[PER]

38.3 %
30 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

30._PA_150_[PER]

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

31._PA_150_[PER] GC-01-034-2-11

38.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998