SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGAAAGAGAAACAAGGAGAAAAAC
1._UF_676___
ACACAGAAAGAGAAACAAGGAGAAAAAC
2._UF_676___
ACACAGAAAGAGAAACAAGGAGAAAAAC
3._UF_676___
____________AA______________
4._UF_676___
__________CT________AG______
5._UF_676___
__________CTAA__AA__________
6._UF_676___
__________CTAA__AA__________
7._UF_676___
__________CTAA__AA__________
8._UF_676___
__________CTAA__AA__________
9._UF_676___
__________CTAA__AA__________
10._UF_676___
__________CTAA__AA__________
11._UF_676___
__________CTAA__AA__________
12._UF_676___
ACACAGAACTCTAAGTAACCAGTTTTGT
13._UF_676___
ACACAGAACTCTAAGTAACCAGTTTTGT
14._UF_676___
ACACAGAACTCTAAGTAACCAGTTTTGT
15._UF_676___
ACACAGAACTCTAAGTAACCAGTTTTGT
16._UF_676___
__________CTAA__AA__________
17._UF_676___
__________CT__GT____AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAGAAGGAAAGACAGCGAGACAG
1._UF_676___
AGAAGGAGAAGGAAAGACAGCGAGACAG
2._UF_676___
AGAAGGAGAAGGAAAGACAGCGAGACAG
3._UF_676___
__GT____________AC__CG______
4._UF_676___
______________CTAC__CG____CT
5._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
6._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
7._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
8._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
9._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
10._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
11._UF_676___
__GTCC__AA__TT__ACCTCGAGGTCT
12._UF_676___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
13._UF_676___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
14._UF_676___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
15._UF_676___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
16._UF_676___
__GTCC__AA__TT__ACCTGGAGGTCT
17._UF_676___
__GT__CT______CTACCTCGAGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGACCGAGGGAGGGCCATATAGAG
1._UF_676___
AGATAGACCGAGGGAGGGCCATATAGAG
2._UF_676___
AGATAGACCGAGGGAGGGCCATATAGAG
3._UF_676___
__________AG____________AG__
4._UF_676___
____AGACCGAG______________AG
5._UF_676___
CT____ACCGAG__CTGG____AT____
6._UF_676___
CT____ACCGAG__CTGG____AT____
7._UF_676___
CT____ACCGAG__CTGG____AT____
8._UF_676___
CT____ACCGAG__CTGG____AT____
9._UF_676___
CT____ACCGAG__CTGG____AT____
10._UF_676___
CT____ACCGAG__CTGG____AT____
11._UF_676___
CT____ACCGAG__CTGG____AT____
12._UF_676___
CTATAGACCGAGGGCTGGGGATATAGAG
13._UF_676___
CTATAGACCGAGGGCTGGGGATATAGAG
14._UF_676___
CTATAGACCGAGGGCTGGGGATATAGAG
15._UF_676___
CTATAGACCGAGGGCTGGGGATATAGAG
16._UF_676___
CT____ACCGAG__CTGG____AT____
17._UF_676___
____AGACCGAG__CT________AGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGGGATCGAGCCCCGGACAACC
1._UF_676___
ATAGAGAGGGATCGAGCCCCGGACAACC
2._UF_676___
ATAGAGAGGGATCGAGCCCCGGACAACC
3._UF_676___
__________________AC______CC
4._UF_676___
ATCT________CG____________CC
5._UF_676___
AT______GG________CC__GT__CC
6._UF_676___
AT______GG________CC__GT__CC
7._UF_676___
AT______GG________CC__GT__CC
8._UF_676___
AT______GG________CC__GT__CC
9._UF_676___
AT______GG________CC__GT__CC
10._UF_676___
AT______GG________CC__GT__CC
11._UF_676___
AT______GG________CC__GT__CC
12._UF_676___
ATCTAGAGGGATCG__CCCCGGGTAACC
13._UF_676___
ATCTAGAGGGATCG__CCCCGGGTAACC
14._UF_676___
ATCTAGAGGGATCG__CCCCGGGTAACC
15._UF_676___
ATCTAGAGGGATCG__CCCCGGGTAACC
16._UF_676___
AT______GG________CC__GT__CC
17._UF_676___
AT__________CG____CC__GT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACAGGGAGAGAGACAGAGACACACACCC
1._UF_676___
ACAGGGAGAGAGACAGAGACACACACCC
2._UF_676___
ACAGGGAGAGAGACAGAGACACACACCC
3._UF_676___
AC__CC______GTAG________ACTT
4._UF_676___
AC__CC____________GT________
5._UF_676___
AC____CT____GT______________
6._UF_676___
AC____CT____GT______________
7._UF_676___
AC____CT____GT______________
8._UF_676___
AC____CT____GT______________
9._UF_676___
AC____CT____GT______________
10._UF_676___
AC____CT____GT______________
11._UF_676___
AC____CT____GT______________
12._UF_676___
ACCTCCCTAGAGGTAGCTGTGTGTACGG
13._UF_676___
ACCTCCCTAGAGGTAGCTGTGTGTACGG
14._UF_676___
ACCTCCCTAGAGGTAGCTGTGTGTACGG
15._UF_676___
ACCTCCCTAGAGGTAGCTGTGTGTACGG
16._UF_676___
AC____CT____GT______________
17._UF_676___
AA__CCCT____GTAGCT____GTAC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
1._UF_676___
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
2._UF_676___
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
3._UF_676___
__CG____AG____________AGX_XX_X
4._UF_676___
AGCGCC______________CT__X_XX_X
5._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
6._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
7._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
8._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
9._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
10._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
11._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
12._UF_676___
AACGCCCCAGACTTGGCTAACTAGX_XX_X
13._UF_676___
AACGCCCCAGACTTGGCTAACTAGX_XX_X
14._UF_676___
AACGCCCCAGACTTGGCTAACTAGX_XX_X
15._UF_676___
AACGCCCCAGACTTGGCTAACTAGX_XX_X
16._UF_676___
__CGCC______TTGG__AACTAGX_XX_X
17._UF_676___
__CGCC____AC__________AGX_XX_X

Input profile: UF_676 UF_676_Fld#_180_Plt#_2

 
USDA-TARS, United States of America
Location: Field: 180, Tree: 2
 Mars, 2018

1._UF_676 RUQ_56

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._UF_676 MITC-000064

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._UF_676 RUQ_56

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._UF_676 RUQ_56

63.6 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

5._UF_676

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 7 > FP
 Dapeng Zhang, 2016

6._UF_676

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 5 > FP
 Dapeng Zhang, 2016

7._UF_676

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 4 > FP
 Dapeng Zhang, 2016

8._UF_676

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 3 > FP
 Dapeng Zhang, 2016

9._UF_676

57.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

10._UF_676 RUQ_56

57.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._UF_676

57.1 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0245
 Dapeng Zhang, 2016

12._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

13._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

15._UF_676 GC-08-080-2-03

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._UF_676

55.7 %
35 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 293 I-043
 Dapeng Zhang, 2016

17._UF_676 RUQ_56

54.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998