SNP Profiles of GU 136/H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GU_136_/H
____AATTTT__AACCGGCC____AA__
3._GU_136_/H
____AATTTT__AACCGGCC____AA__
4._GU_136_/H
____AATTTT__AACCGGCC____AA__
5._GU_136_/H
____AATTTT__AACCGGCC____AA__
6._GU_136_/H
____AATTTT__AACCGGCC____AA__
7._GU_136_/H
____AATTTT__AACCGGCC____AA__
8._GU_136_/H
____AATTTT__AACCGGCC____AA__
9._GU_136_/H
____AATTTT__AACCGGCC____AA__
10._GU_136_/H
____AATTTT__AACCGGCC____AA__
11._GU_136_/H
____AATTTT__AACCGGCC____AA__
12._GU_136_/H
____AATTTT__AACCGGCC____AA__
13._GU_136_/H
____AATTTT__AACCGGCC____AA__
14._GU_136_/H
____AATTTT__AACCGGCC____AA__
15._RUQ_221
____AATTTT__AACCGGCC____AA__
16._GU_136_/H
____AATTTT__AACCGGCC____AA__
17._GU_136_/H
____AA__TT__AACCGGCC____AA__
18._RUQ_221
____AA__________GG__GG______
19._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
31._GC-03-019-2-08
TTCCAATTTTGGAACCGGCCGGGGAACC
32._GC-03-019-2-08
TTCCAA__TTGGAACCGGCCGGGGAACC
33._GC-03-19-2-8
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCCCCCCCCCGGAATTAAGG
1._GC-03-019-2-08
GGAACCGGCCCCCCCC__GGAATTAAGG
2._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
3._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
4._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
5._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
6._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
7._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
8._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
9._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
10._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
11._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
12._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
13._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
14._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
15._RUQ_221
GGAACCGGCCCC__CC__GG______GG
16._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
17._GU_136_/H
GGAACCGGCCCC__CC__GG______GG
18._RUQ_221
__AA____CCCCCC__CCGGAA__AAGG
19._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
20._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
21._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
22._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
23._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
24._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
25._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
26._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
27._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
28._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
29._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
30._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
31._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
32._GC-03-019-2-08
GGAACCGGCCCCCCCCCTGGAATTAAGG
33._GC-03-19-2-8
__AA__CCCCCCGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCCGGGGTTTTTTCCCCGGGG
1._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
2._GU_136_/H
__CCAA__CC______TT____CCGGGG
3._GU_136_/H
__CCAA__CC______TT____CCGGGG
4._GU_136_/H
__CCAA__CC______TT____CCGGGG
5._GU_136_/H
__CCAA__CC______TT____CCGGGG
6._GU_136_/H
__CCAA__CC______TT____CCGGGG
7._GU_136_/H
__CCAA__CC______TT____CCGGGG
8._GU_136_/H
__CCAA__CC______TT____CCGGGG
9._GU_136_/H
__CCAA__CC______TT____CCGGGG
10._GU_136_/H
__CCAA__CC______TT____CCGGGG
11._GU_136_/H
__CCAA__CC______TT____CCGGGG
12._GU_136_/H
__CCAA__CC______TT____CCGGGG
13._GU_136_/H
__CCAA__CC______TT____CCGGGG
14._GU_136_/H
__CCAA__CC______TT____CCGGGG
15._RUQ_221
__CCAA__CC______TT____CCGGGG
16._GU_136_/H
__CCAA__CC____________CCGGGG
17._GU_136_/H
__CCAA__CC______TT____CCGGGG
18._RUQ_221
____AACC________TT______GG__
19._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
20._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
21._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
22._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
23._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
24._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
25._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
26._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
27._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
28._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
29._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
30._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
31._GC-03-019-2-08
CCCCAACCCCGGGGTT__TTCCCCGGGG
32._GC-03-019-2-08
CCCCAACCCCGGGGTTTTTTCCCCGGGG
33._GC-03-19-2-8
__GGAA__GGCCGG__AAAAGGGGCCGG

Input profile: GU_136_/H RUQ_221

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_136_/H GC-03-019-2-08

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

3._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

4._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

5._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

6._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

7._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

8._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

9._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

11._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

12._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

13._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

14._GU_136_/H

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

15._GU_136_/H RUQ_221

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_136_/H

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

18._GU_136_/H RUQ_221

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
GU
0.998

19._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

33._GU_136_/H GC-03-19-2-8

44.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484