SNP Profiles of GU 147/H   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_147_/H
____AATTTT__AACCGGCC____AA__
2._GU_147_/H
____AATTTT__AACCGGCC____AA__
3._GU_147_/H
____AATTTT__AACCGGCC____AA__
4._GU_147_/H
____AATTTT__AACCGGCC____AA__
5._GU_147_/H
____AATTTT__AACCGGCC____AA__
6._GU_147_/H
____AATTTT__AACCGGCC____AA__
7._GU_147_/H
____AATTTT__AACCGGCC____AA__
8._GU_147_/H
____AATTTT__AACCGGCC____AA__
9._RUQ_222
____AATTTT__AACCGGCC____AA__
10._GU_147_/H
______TTTT__AACCGGCC____AA__
11._RUQ_222
____AA__________GG__GG______
12._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
13._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
14._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
15._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
16._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
17._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-01-080-4-16
TTCC__TTTTGGAACCGGCCGGGGAACC
21._GC-01-80-4-16
AACCAAAAAAGGAAGGGGGGGGGGAAGG
22._RUQ_222
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCAACCCTCCGGAATTAAGG
1._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
2._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
3._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
4._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
5._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
6._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
7._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
8._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
9._RUQ_222
GGAACCGGCCAA__CT__GG______GG
10._GU_147_/H
GGAACCGGCCAA__CT__GG______GG
11._RUQ_222
__AA____CCAACC__CCGGAA__AAGG
12._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
13._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
14._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
15._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
16._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
17._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
18._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
19._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
20._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
21._GC-01-80-4-16
__AA__CCCCAAGGAG__CCAAAAAACC
22._RUQ_222
__AA__CCCCCCGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
1._GU_147_/H
__CCGG__CC______TT____CCCCGG
2._GU_147_/H
__CCGG__CC______TT____CCCCGG
3._GU_147_/H
__CCGG__CC______TT____CCCCGG
4._GU_147_/H
__CCGG__CC______TT____CCCCGG
5._GU_147_/H
__CCGG__CC______TT____CCCCGG
6._GU_147_/H
__CCGG__CC______TT____CCCCGG
7._GU_147_/H
__CCGG__CC______TT____CCCCGG
8._GU_147_/H
__CCGG__CC______TT____CCCCGG
9._RUQ_222
__CCGG__CC______TT____CCCCGG
10._GU_147_/H
__CCGG__CC______TT____CCCCGG
11._RUQ_222
____GGCC________TT______CC__
12._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
13._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
14._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
15._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
16._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
17._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
18._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
19._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
20._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
21._GC-01-80-4-16
__GGGG__GGCCGG__AAAAGGGGGGGG
22._RUQ_222
__GGAG__GGCCGG__AAAAGGGGCCAG

Input profile: GU_147_/H RUQ_222

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016

3._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

4._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

5._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

6._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

7._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

8._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

9._GU_147_/H RUQ_222

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._GU_147_/H

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

11._GU_147_/H RUQ_222

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

19._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._GU_147_/H GC-01-080-4-16

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._GU_147_/H GC-01-80-4-16

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

41.7 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484